BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0239300 Os08g0239300|AK059753
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0239300 Dienelactone hydrolase domain containing protein 497 e-141
Os08g0238200 Dienelactone hydrolase domain containing protein 367 e-102
Os11g0275200 Similar to Endo-1,3 359 1e-99
Os11g0275500 Similar to Endo-1,3 355 2e-98
Os08g0238500 Similar to Endo-1,3 333 7e-92
Os11g0275000 Similar to Endo-1,3 320 9e-88
Os08g0238600 Similar to Endo-1,3 276 1e-74
Os05g0400200 273 1e-73
Os05g0400100 Dienelactone hydrolase domain containing protein 256 9e-69
Os08g0239100 Conserved hypothetical protein 243 8e-65
Os05g0399200 Similar to Endo-1,3 230 7e-61
Os05g0399100 Similar to Endo-1,3 229 2e-60
Os08g0283600 107 1e-23
Os08g0236200 Reverse transcriptase, RNA-dependent DNA polym... 87 2e-17
>Os08g0239300 Dienelactone hydrolase domain containing protein
Length = 263
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/263 (92%), Positives = 243/263 (92%)
Query: 1 MAPALLYPTILFLXXXXXXXXXPPHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTG 60
MAPALLYPTILFL PPHSQCLDNPPDLTT HDLGGFEAYVTG
Sbjct: 1 MAPALLYPTILFLAAAAVGAAAPPHSQCLDNPPDLTTAGGGGEAGVVVHDLGGFEAYVTG 60
Query: 61 AVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAH 120
AVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAH
Sbjct: 61 AVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAH 120
Query: 121 SPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADD 180
SPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADD
Sbjct: 121 SPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADD 180
Query: 181 MKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASN 240
MKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASN
Sbjct: 181 MKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASN 240
Query: 241 PFEVKKAEQALALMLDWFHKHLK 263
PFEVKKAEQALALMLDWFHKHLK
Sbjct: 241 PFEVKKAEQALALMLDWFHKHLK 263
>Os08g0238200 Dienelactone hydrolase domain containing protein
Length = 276
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/242 (73%), Positives = 201/242 (83%), Gaps = 4/242 (1%)
Query: 24 PHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLR 83
P QCL+NPP+LT +LGGF AYVTGA HS R I+LA+D+FGFEAPLLR
Sbjct: 37 PRLQCLENPPELTAAGDGEAGVVV-QNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLR 95
Query: 84 KIADKVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEGK 141
KIADKVG AGYYVVVPD F G+PY D N T+W+ AHSPVKAAED+KPIFAAL +EGK
Sbjct: 96 KIADKVGEAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGK 155
Query: 142 SIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPP 201
S+VGVGGYCWGGK AVEVAKTNEV AIVISHP++VTADDMK+VK PIEILGA+ND VTPP
Sbjct: 156 SVVGVGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPP 215
Query: 202 RLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKH 261
RLVYQFV+ALRQR ++DYFA++F GV HGFACRYNASNPF V+ AEQ+LALMLDWF KH
Sbjct: 216 RLVYQFVNALRQRP-EVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKH 274
Query: 262 LK 263
LK
Sbjct: 275 LK 276
>Os11g0275200 Similar to Endo-1,3
Length = 266
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/241 (72%), Positives = 196/241 (81%), Gaps = 3/241 (1%)
Query: 23 PPHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLL 82
PP QC ++PPD+ HDL G+EAYVTGA HS R I+LA+D++GF+APLL
Sbjct: 29 PPRLQCFEHPPDMKAGGGEAGVVV--HDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLL 86
Query: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKS 142
R+IADKVG AGYYVVVPDLFHG P T N TEWL +HSPVK AE AK IFA L EGKS
Sbjct: 87 RQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKS 146
Query: 143 IVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPR 202
+VGVGGYCWGGKFAVEVAKTNEVEA+VISHP AVTADDMKEVKWPIEILG QNDTVTPPR
Sbjct: 147 LVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPR 206
Query: 203 LVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHL 262
LVYQ+VHALRQR D ID++AK+F GV+HGFA RYN S+PF ++ +QALALMLDWF KHL
Sbjct: 207 LVYQYVHALRQRND-IDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHL 265
Query: 263 K 263
K
Sbjct: 266 K 266
>Os11g0275500 Similar to Endo-1,3
Length = 276
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/243 (72%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
Query: 24 PHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTG-AVHSRRTILLATDIFGFEAPLL 82
P QCL+NPP+LT +LGGF AYVTG A HS R I+LA+D+FGFEAPLL
Sbjct: 36 PRLQCLENPPELTAAGDGEAGVVV-QNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLL 94
Query: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEG 140
RKIADKVG AGYYVVVPD F +PY D N T+W+ AHSPVKAAED+KPIFAAL +EG
Sbjct: 95 RKIADKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREG 154
Query: 141 KSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTP 200
K +VGVGGYCWGGK AVEVAKTNEV AIVISHP++VTADDMK+VK PIEILGA+ND VTP
Sbjct: 155 KYVVGVGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTP 214
Query: 201 PRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHK 260
PRLVYQFV+ALRQR ++DYFA++F GV HGFACRYNASNPF V+ AEQ+LALMLDWF K
Sbjct: 215 PRLVYQFVNALRQRP-EVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEK 273
Query: 261 HLK 263
HLK
Sbjct: 274 HLK 276
>Os08g0238500 Similar to Endo-1,3
Length = 279
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 169/246 (68%), Positives = 189/246 (76%), Gaps = 12/246 (4%)
Query: 28 CLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIAD 87
CLDNPP+LT DL GF AYVTG VHS R I+LA+DI+GFEAPLLR AD
Sbjct: 36 CLDNPPELTADGDGEAGVVI-DDLAGFPAYVTGDVHSGRAIILASDIYGFEAPLLRDNAD 94
Query: 88 KVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVG 145
KVG AGYYVVVPD FHGQPY D N T+W++ HSPVKAAEDAK IFAAL +EGKS++G
Sbjct: 95 KVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSVIG 154
Query: 146 VGGYCWG--------GKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDT 197
+GGYCWG KFAVEVAKTNEVEAIVISHP+ V ADDMK VK PIEILG QND
Sbjct: 155 IGGYCWGVSAQVQLAAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQNDP 214
Query: 198 VTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDW 257
+TPP LV QFV+ LRQ T ++DYFA++F GV+HGFACRYNASN F V AEQALALMLDW
Sbjct: 215 ITPPSLVDQFVNVLRQTT-EVDYFARIFPGVSHGFACRYNASNQFAVNTAEQALALMLDW 273
Query: 258 FHKHLK 263
F K+LK
Sbjct: 274 FEKYLK 279
>Os11g0275000 Similar to Endo-1,3
Length = 372
Score = 320 bits (819), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 162/246 (65%), Positives = 184/246 (74%), Gaps = 12/246 (4%)
Query: 28 CLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIAD 87
CLDNPP+LT DL GF AYVTG VHS R I++A+DI+GFEAPLLR AD
Sbjct: 36 CLDNPPELTADGDSEAGVVI-DDLAGFPAYVTGDVHSGRAIIVASDIYGFEAPLLRDNAD 94
Query: 88 KVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVG 145
KVG AGYYVVVPD FHGQPY D N T+W++ HSPVKAAEDAK IFAAL +EGKS++G
Sbjct: 95 KVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSVIG 154
Query: 146 VGGYCWG--------GKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDT 197
+GGYCWG KFAVEVAKTNEVEAIVISHP+ V ADDMK VK PIEILG QND
Sbjct: 155 IGGYCWGVSAQVQLTAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQNDH 214
Query: 198 VTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDW 257
+TPP LV QFV+ LRQ T ++DYF ++F V+HGFACRYNASN F VK A+QALALMLD
Sbjct: 215 ITPPSLVDQFVNVLRQTT-EVDYFVRIFPDVSHGFACRYNASNQFAVKTAQQALALMLDC 273
Query: 258 FHKHLK 263
L+
Sbjct: 274 TSSPLR 279
>Os08g0238600 Similar to Endo-1,3
Length = 173
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 144/169 (85%), Gaps = 1/169 (0%)
Query: 95 YVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGK 154
YVVVPDLFHG P T N TEWL +HSPVK AE AK IFA L EGKS+VGVGGYCWGGK
Sbjct: 6 YVVVPDLFHGDPATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCWGGK 65
Query: 155 FAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQR 214
FAV VAKTNEVEA+VISHP AVTADDMKEVKWPIEILG QNDTVTPPRLVYQ+VHALRQR
Sbjct: 66 FAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQR 125
Query: 215 TDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
D ID++AK+F GV+HGFA RYN S+PF V+ +QALALMLDWF KHLK
Sbjct: 126 ND-IDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
>Os05g0400200
Length = 290
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 166/238 (69%), Gaps = 4/238 (1%)
Query: 28 CLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIAD 87
CLDN P++T HD GG E YVTG+ S R I+L +D +GF AP LR+IAD
Sbjct: 47 CLDNSPNMTEKTGGEAGEVV-HDYGGLECYVTGSRRSGRAIILVSDYYGFRAPKLRQIAD 105
Query: 88 KVGLAGYYVVVPDLFHGQPYTFDQNRT--EWLSAHSPVKAAEDAKPIFAALSKEGKSIVG 145
KV +GYYVVVPDL +G PYT D R W+ AHSP +AAE KP+ A L KEG S VG
Sbjct: 106 KVAYSGYYVVVPDLLYGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVG 165
Query: 146 VGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVY 205
VGGYCWGGK AVE++KT E +A+VISHP+ VT DM EVK PIEILG + DT+TPP +V+
Sbjct: 166 VGGYCWGGKVAVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVH 225
Query: 206 QFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
QF HAL Q +++D+F K F H FACRYNAS+PF VK AE+A A M+ WF ++LK
Sbjct: 226 QFEHALDQ-NNRVDHFVKTFPKAPHAFACRYNASDPFAVKTAEEARADMVQWFDEYLK 282
>Os05g0400100 Dienelactone hydrolase domain containing protein
Length = 290
Score = 256 bits (655), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 164/245 (66%), Gaps = 6/245 (2%)
Query: 23 PPHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSR-RTILLATDIFGFEAPL 81
P CL+NPP++T H GG E Y TG+ S R ++L +D +GF AP
Sbjct: 44 PQKHPCLENPPNMTENTGGEAGDVV-HGYGGLECYATGSRRSGGRAVILVSDYYGFRAPK 102
Query: 82 LRKIADKVGLA-GYYVVVPDLFHGQPYTFDQNR--TEWLSAHSPVKAAEDAKPIFAALSK 138
LRKIADKV G YVVVPDL G PYT D R EW+ HSPV+AAE KP+ AAL K
Sbjct: 103 LRKIADKVAYQLGCYVVVPDLLFGDPYTDDPARPFEEWIKTHSPVEAAEKTKPLIAALKK 162
Query: 139 EGKSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTV 198
+G S VGVGGYCWGGK AVE++KT E +A+VISHPA V DDMKEVK PIEILG + DT+
Sbjct: 163 DGTSTVGVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTI 222
Query: 199 TPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWF 258
+PP+L++Q AL Q ++ + K+F HGFACRYNA++PF VK AE+A A M+ WF
Sbjct: 223 SPPQLIHQLEDALDQ-NKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWF 281
Query: 259 HKHLK 263
K+L+
Sbjct: 282 DKYLE 286
>Os08g0239100 Conserved hypothetical protein
Length = 208
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 126/196 (64%), Positives = 140/196 (71%), Gaps = 8/196 (4%)
Query: 23 PPHSQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLL 82
P HSQCLDNPPDLT HDL GFEAYVTGAVHS + +LLA+D+FGFEAPLL
Sbjct: 20 PTHSQCLDNPPDLTAGGGEAGVVV--HDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLL 77
Query: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKS 142
RKIADKVG AGYYV VPD FHG PYT D N TEW S HSP+K A + + K
Sbjct: 78 RKIADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ 137
Query: 143 IVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPR 202
Y KFAVEVAKTNEVEAIV +HP VT DD+KEVK PIEI+GAQNDT+TPP+
Sbjct: 138 -----NYIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPK 191
Query: 203 LVYQFVHALRQRTDQI 218
LVYQ+V ALR RTD+I
Sbjct: 192 LVYQYVQALRHRTDRI 207
>Os05g0399200 Similar to Endo-1,3
Length = 239
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 153/240 (63%), Gaps = 6/240 (2%)
Query: 26 SQCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKI 85
SQC +NPP L D GG +AYV G+ S+ ++L +D FGFEAP LRKI
Sbjct: 4 SQCWENPPALDPAGGGGEVVG---DFGGQKAYVAGSAGSKAAVVLISDAFGFEAPNLRKI 60
Query: 86 ADKVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEGKSI 143
ADKV L GY+VVVPD HG PY D N WL +H+P +A E+AKP+ AAL ++G S
Sbjct: 61 ADKVALFGYFVVVPDFLHGDPYQPDNPNNPGIWLQSHNPKEAFEEAKPVIAALKEKGASF 120
Query: 144 VGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRL 203
+G GYCWG K VE+ K +E++A V+ HP+ + DD+KEVK PI ILGA+ D +PP L
Sbjct: 121 IGAAGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPEL 180
Query: 204 VYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
+ QF L +I +F K+F GV HG+A RYN + VK AE+AL M+DWF K+LK
Sbjct: 181 LKQFEQILSPNP-EIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
>Os05g0399100 Similar to Endo-1,3
Length = 284
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 150/240 (62%), Gaps = 7/240 (2%)
Query: 27 QCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIA 86
QC NPP L GG +AYV GA S+ ++L +D+FGFEAP LRKIA
Sbjct: 49 QCCANPPTLNPAGGEGKVV---ESFGGIKAYVAGAAESKAAVVLISDVFGFEAPNLRKIA 105
Query: 87 DKVGLAGYYVVVPDLFHGQPYTFDQNRTE---WLSAHSPVKAAEDAKPIFAALSKEGKSI 143
DKV +GY+VVVPD HG P + W+ H P KA E+AKPI AAL ++G S
Sbjct: 106 DKVASSGYFVVVPDFLHGDPLVPESTEKPFQMWIKEHGPDKAFEEAKPIIAALKEKGVSS 165
Query: 144 VGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRL 203
+G GYCWG K VE+ K +E++A V+ HP+ VT DDMKEVK PI ILGA+ D ++PP +
Sbjct: 166 IGAVGYCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEIDRMSPPEV 225
Query: 204 VYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
V QF L ++ I +F K+F GV HG+ RY + VK AE+ALA M+DWF+K+LK
Sbjct: 226 VKQFEQVLSSKSG-IGHFVKIFPGVEHGWTVRYKNDDAAAVKSAEEALADMIDWFNKNLK 284
>Os08g0283600
Length = 290
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 58/71 (81%), Gaps = 2/71 (2%)
Query: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEG 140
RKIADKVG AGYYVVVPD FHG+PY + N T+W+ AHSPVKAAEDAK IFAAL +E
Sbjct: 87 RKIADKVGEAGYYVVVPDFFHGRPYNGEPSINITQWIMAHSPVKAAEDAKLIFAALKRER 146
Query: 141 KSIVGVGGYCW 151
KSIV VGGYCW
Sbjct: 147 KSIVEVGGYCW 157
>Os08g0236200 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 624
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%)
Query: 218 IDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
+DYFA++F GV HGFACRYN SNPF V+ AEQ+LALMLDWF KHLK
Sbjct: 579 VDYFARIFPGVAHGFACRYNGSNPFAVRTAEQSLALMLDWFEKHLK 624
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,619,682
Number of extensions: 332137
Number of successful extensions: 685
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 14
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)