BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0238200 Os08g0238200|AK067264
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0238200 Dienelactone hydrolase domain containing protein 502 e-142
Os11g0275500 Similar to Endo-1,3 471 e-133
Os08g0238500 Similar to Endo-1,3 396 e-110
Os11g0275000 Similar to Endo-1,3 376 e-105
Os08g0239300 Dienelactone hydrolase domain containing protein 357 6e-99
Os11g0275200 Similar to Endo-1,3 355 2e-98
Os05g0400200 293 1e-79
Os05g0400100 Dienelactone hydrolase domain containing protein 286 1e-77
Os08g0238600 Similar to Endo-1,3 260 7e-70
Os05g0399200 Similar to Endo-1,3 255 2e-68
Os05g0399100 Similar to Endo-1,3 250 1e-66
Os08g0239100 Conserved hypothetical protein 224 6e-59
Os08g0283600 138 4e-33
Os08g0236200 Reverse transcriptase, RNA-dependent DNA polym... 102 2e-22
>Os08g0238200 Dienelactone hydrolase domain containing protein
Length = 276
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/276 (89%), Positives = 248/276 (89%)
Query: 1 MTITMQAKPITMATXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPPELTAAGDGEAGVVV 60
MTITMQAKPITMAT ENPPELTAAGDGEAGVVV
Sbjct: 1 MTITMQAKPITMATASMLLRSLLCLAVLAAAAAAAQPRLQCLENPPELTAAGDGEAGVVV 60
Query: 61 QNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYN 120
QNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYN
Sbjct: 61 QNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYN 120
Query: 121 GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWGGKLAVEVAKTNEVG 180
GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWGGKLAVEVAKTNEVG
Sbjct: 121 GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWGGKLAVEVAKTNEVG 180
Query: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG
Sbjct: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
Query: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
>Os11g0275500 Similar to Endo-1,3
Length = 276
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/276 (86%), Positives = 240/276 (86%), Gaps = 4/276 (1%)
Query: 5 MQAKPITMATXXXXXXXXXXXXXXXXXXXXXXXXX---XXXENPPELTAAGDGEAGVVVQ 61
MQ KPITMA ENPPELTAAGDGEAGVVVQ
Sbjct: 1 MQTKPITMAPTSMLHRSLLCLAVLAAAAGGGAAGSPRLQCLENPPELTAAGDGEAGVVVQ 60
Query: 62 NLGGFAAYVTG-AAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYN 120
NLGGFAAYVTG AAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQ RPYN
Sbjct: 61 NLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYN 120
Query: 121 GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWGGKLAVEVAKTNEVG 180
GDPSINIT+WIMAHSPVKAAEDSKPIFAALKREGK VVGVGGYCWGGKLAVEVAKTNEVG
Sbjct: 121 GDPSINITKWIMAHSPVKAAEDSKPIFAALKREGKYVVGVGGYCWGGKLAVEVAKTNEVG 180
Query: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG
Sbjct: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
Query: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
>Os08g0238500 Similar to Endo-1,3
Length = 279
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/242 (78%), Positives = 207/242 (85%), Gaps = 8/242 (3%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
+NPPELTA GDGEAGVV+ +L GF AYVTG HSGRAI+LASD++GFEAPLLR ADKVG
Sbjct: 38 DNPPELTADGDGEAGVVIDDLAGFPAYVTGDVHSGRAIILASDIYGFEAPLLRDNADKVG 97
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
EAGYYVVVPDFF G+PYNGDPSIN+T+WI HSPVKAAED+K IFAALKREGKSV+G+GG
Sbjct: 98 EAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSVIGIGG 157
Query: 163 YCWG--------GKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTP 214
YCWG K AVEVAKTNEV AIVISHPS V ADDMK VKCPIEILG +ND +TP
Sbjct: 158 YCWGVSAQVQLAAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQNDPITP 217
Query: 215 PRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKH 274
P LV QFVN LRQ EVDYFARIFPGV+HGFACRYNASN FAV TAEQ+LALMLDWFEK+
Sbjct: 218 PSLVDQFVNVLRQTTEVDYFARIFPGVSHGFACRYNASNQFAVNTAEQALALMLDWFEKY 277
Query: 275 LK 276
LK
Sbjct: 278 LK 279
>Os11g0275000 Similar to Endo-1,3
Length = 372
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/242 (74%), Positives = 200/242 (82%), Gaps = 8/242 (3%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
+NPPELTA GD EAGVV+ +L GF AYVTG HSGRAI++ASD++GFEAPLLR ADKVG
Sbjct: 38 DNPPELTADGDSEAGVVIDDLAGFPAYVTGDVHSGRAIIVASDIYGFEAPLLRDNADKVG 97
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
EAGYYVVVPDFF G+PYNGDPSIN+T+WI HSPVKAAED+K IFAALKREGKSV+G+GG
Sbjct: 98 EAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSVIGIGG 157
Query: 163 YCWG--------GKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTP 214
YCWG K AVEVAKTNEV AIVISHPS V ADDMK VKCPIEILG +ND +TP
Sbjct: 158 YCWGVSAQVQLTAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQNDHITP 217
Query: 215 PRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKH 274
P LV QFVN LRQ EVDYF RIFP V+HGFACRYNASN FAV+TA+Q+LALMLD
Sbjct: 218 PSLVDQFVNVLRQTTEVDYFVRIFPDVSHGFACRYNASNQFAVKTAQQALALMLDCTSSP 277
Query: 275 LK 276
L+
Sbjct: 278 LR 279
>Os08g0239300 Dienelactone hydrolase domain containing protein
Length = 263
Score = 357 bits (915), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/236 (75%), Positives = 202/236 (85%), Gaps = 4/236 (1%)
Query: 43 ENPPELTAAGDGEAGVVV-QNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKV 101
+NPP+LT AG G VV +LGGF AYVTGA HS R I+LA+D+FGFEAPLLRKIADKV
Sbjct: 30 DNPPDLTTAGGGGEAGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKV 89
Query: 102 GEAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVG 161
G AGYYVVVPD F G+PY D N T+W+ AHSPVKAAED+KPIFAAL +EGKS+VGVG
Sbjct: 90 GLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVG 147
Query: 162 GYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQF 221
GYCWGGK AVEVAKTNEV AIVISHP++VTADDMK+VK PIEILGA+ND VTPPRLVYQF
Sbjct: 148 GYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQF 207
Query: 222 VNALRQRP-EVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
V+ALRQR ++DYFA++F GV HGFACRYNASNPF V+ AEQ+LALMLDWF KHLK
Sbjct: 208 VHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
>Os11g0275200 Similar to Endo-1,3
Length = 266
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/234 (71%), Positives = 202/234 (86%), Gaps = 3/234 (1%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
E+PP++ A G GEAGVVV +L G+ AYVTGAAHSGRAIVLASDV+GF+APLLR+IADKVG
Sbjct: 36 EHPPDMKAGG-GEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVG 94
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
+AGYYVVVPD F G P ++N T+W+ +HSPVK AE +K IFA L+ EGKS+VGVGG
Sbjct: 95 DAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGG 152
Query: 163 YCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFV 222
YCWGGK AVEVAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND VTPPRLVYQ+V
Sbjct: 153 YCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYV 212
Query: 223 NALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
+ALRQR ++D++A+IFPGV+HGFA RYN S+PFA+ T +Q+LALMLDWF+KHLK
Sbjct: 213 HALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
>Os05g0400200
Length = 290
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 139/234 (59%), Positives = 171/234 (73%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
+N P +T GEAG VV + GG YVTG+ SGRAI+L SD +GF AP LR+IADKV
Sbjct: 49 DNSPNMTEKTGGEAGEVVHDYGGLECYVTGSRRSGRAIILVSDYYGFRAPKLRQIADKVA 108
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
+GYYVVVPD G PY DP+ WIMAHSP +AAE +KP+ A LK+EG S VGVGG
Sbjct: 109 YSGYYVVVPDLLYGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVGVGG 168
Query: 163 YCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFV 222
YCWGGK+AVE++KT E A+VISHPS VT DM +VK PIEILG E D +TPP +V+QF
Sbjct: 169 YCWGGKVAVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVHQFE 228
Query: 223 NALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
+AL Q VD+F + FP H FACRYNAS+PFAV+TAE++ A M+ WF+++LK
Sbjct: 229 HALDQNNRVDHFVKTFPKAPHAFACRYNASDPFAVKTAEEARADMVQWFDEYLK 282
>Os05g0400100 Dienelactone hydrolase domain containing protein
Length = 290
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/236 (57%), Positives = 172/236 (72%), Gaps = 2/236 (0%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSG-RAIVLASDVFGFEAPLLRKIADKV 101
ENPP +T GEAG VV GG Y TG+ SG RA++L SD +GF AP LRKIADKV
Sbjct: 51 ENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKLRKIADKV 110
Query: 102 G-EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGV 160
+ G YVVVPD G PY DP+ +WI HSPV+AAE +KP+ AALK++G S VGV
Sbjct: 111 AYQLGCYVVVPDLLFGDPYTDDPARPFEEWIKTHSPVEAAEKTKPLIAALKKDGTSTVGV 170
Query: 161 GGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQ 220
GGYCWGGK+AVE++KT E A+VISHP+ V DDMK+VKCPIEILG E D ++PP+L++Q
Sbjct: 171 GGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTISPPQLIHQ 230
Query: 221 FVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
+AL Q V + +IFP HGFACRYNA++PFAV+TAE++ A M+ WF+K+L+
Sbjct: 231 LEDALDQNKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDKYLE 286
>Os08g0238600 Similar to Endo-1,3
Length = 173
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 143/170 (84%), Gaps = 2/170 (1%)
Query: 107 YVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWG 166
YVVVPD F G P S+N T+W+ +HSPVK AE +K IFA L+ EGKSVVGVGGYCWG
Sbjct: 6 YVVVPDLFHGDP--ATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCWG 63
Query: 167 GKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALR 226
GK AV VAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND VTPPRLVYQ+V+ALR
Sbjct: 64 GKFAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALR 123
Query: 227 QRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
QR ++D++A+IFPGV+HGFA RYN S+PFAV T +Q+LALMLDWF+KHLK
Sbjct: 124 QRNDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
>Os05g0399200 Similar to Endo-1,3
Length = 239
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/234 (53%), Positives = 161/234 (68%), Gaps = 2/234 (0%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
ENPP L AG G G VV + GG AYV G+A S A+VL SD FGFEAP LRKIADKV
Sbjct: 8 ENPPALDPAGGG--GEVVGDFGGQKAYVAGSAGSKAAVVLISDAFGFEAPNLRKIADKVA 65
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
GY+VVVPDF G PY D N W+ +H+P +A E++KP+ AALK +G S +G G
Sbjct: 66 LFGYFVVVPDFLHGDPYQPDNPNNPGIWLQSHNPKEAFEEAKPVIAALKEKGASFIGAAG 125
Query: 163 YCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFV 222
YCWG K+ VE+ K +E+ A V+ HPS + DD+K+VKCPI ILGAE D +PP L+ QF
Sbjct: 126 YCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPELLKQFE 185
Query: 223 NALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
L PE+ +F +IFPGV HG+A RYN + AV++AE++L M+DWF+K+LK
Sbjct: 186 QILSPNPEIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
>Os05g0399100 Similar to Endo-1,3
Length = 284
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 161/234 (68%), Gaps = 3/234 (1%)
Query: 44 NPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVGE 103
NPP L AG GE G VV++ GG AYV GAA S A+VL SDVFGFEAP LRKIADKV
Sbjct: 53 NPPTLNPAG-GE-GKVVESFGGIKAYVAGAAESKAAVVLISDVFGFEAPNLRKIADKVAS 110
Query: 104 AGYYVVVPDFFQGRPYNGDPSINITQ-WIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
+GY+VVVPDF G P + + Q WI H P KA E++KPI AALK +G S +G G
Sbjct: 111 SGYFVVVPDFLHGDPLVPESTEKPFQMWIKEHGPDKAFEEAKPIIAALKEKGVSSIGAVG 170
Query: 163 YCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFV 222
YCWG K+ VE+ K +E+ A V+ HPS VT DDMK+VKCPI ILGAE D ++PP +V QF
Sbjct: 171 YCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEIDRMSPPEVVKQFE 230
Query: 223 NALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
L + + +F +IFPGV HG+ RY + AV++AE++LA M+DWF K+LK
Sbjct: 231 QVLSSKSGIGHFVKIFPGVEHGWTVRYKNDDAAAVKSAEEALADMIDWFNKNLK 284
>Os08g0239100 Conserved hypothetical protein
Length = 208
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 138/188 (73%), Gaps = 9/188 (4%)
Query: 43 ENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKVG 102
+NPP+LTA G GEAGVVV +L GF AYVTGA HS +A++LASDVFGFEAPLLRKIADKVG
Sbjct: 27 DNPPDLTAGG-GEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIADKVG 85
Query: 103 EAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGG 162
+AGYYV VPDFF G PY D +N+T+W HSP+K A +K + K
Sbjct: 86 QAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ-----N 138
Query: 163 YCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFV 222
Y K AVEVAKTNEV AIV +HP VT DD+K+VKCPIEI+GA+ND +TPP+LVYQ+V
Sbjct: 139 YIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQYV 197
Query: 223 NALRQRPE 230
ALR R +
Sbjct: 198 QALRHRTD 205
>Os08g0283600
Length = 290
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 67/71 (94%)
Query: 95 RKIADKVGEAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREG 154
RKIADKVGEAGYYVVVPDFF GRPYNG+PSINITQWIMAHSPVKAAED+K IFAALKRE
Sbjct: 87 RKIADKVGEAGYYVVVPDFFHGRPYNGEPSINITQWIMAHSPVKAAEDAKLIFAALKRER 146
Query: 155 KSVVGVGGYCW 165
KS+V VGGYCW
Sbjct: 147 KSIVEVGGYCW 157
>Os08g0236200 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 624
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/46 (97%), Positives = 45/46 (97%)
Query: 231 VDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VDYFARIFPGVAHGFACRYN SNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 579 VDYFARIFPGVAHGFACRYNGSNPFAVRTAEQSLALMLDWFEKHLK 624
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,829,512
Number of extensions: 362858
Number of successful extensions: 827
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 14
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)