BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0136100 Os08g0136100|AB101650
(130 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0136100 Similar to Roc1 269 4e-73
Os04g0627000 Similar to Roc1 265 7e-72
Os04g0569100 Similar to OCL1 homeobox protein 209 3e-55
Os02g0674800 Similar to OCL1 homeobox protein 196 5e-51
Os08g0187500 Similar to Roc1 193 3e-50
Os10g0575600 Homeodomain-related containing protein 189 4e-49
Os09g0526300 Similar to Homeobox protein GLABRA2 (Homeobox-... 189 7e-49
Os06g0208100 Similar to Homeodomain protein HOX3 184 1e-47
Os01g0760800 Similar to Homeodomain protein 1 105 1e-23
Os01g0788800 Homeodomain-like containing protein 102 9e-23
Os07g0426600 100 2e-22
Os08g0292000 Homeobox domain containing protein 81 2e-16
Os03g0109400 Homeobox domain containing protein 65 2e-11
>Os08g0136100 Similar to Roc1
Length = 130
Score = 269 bits (688), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH
Sbjct: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE
Sbjct: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
Query: 121 IDRISAIAAK 130
IDRISAIAAK
Sbjct: 121 IDRISAIAAK 130
>Os04g0627000 Similar to Roc1
Length = 784
Score = 265 bits (677), Expect = 7e-72, Method: Composition-based stats.
Identities = 119/130 (91%), Positives = 128/130 (98%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RKKRYHRHTQHQIQE+EAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK QH
Sbjct: 104 RKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQH 163
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
ERHEN+ LR++NEKLRAENMRYKEAL++ASCPNCGGPAA+GEMSFDEHHLR+ENARLR+E
Sbjct: 164 ERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRIENARLREE 223
Query: 121 IDRISAIAAK 130
IDRISAIAAK
Sbjct: 224 IDRISAIAAK 233
>Os04g0569100 Similar to OCL1 homeobox protein
Length = 806
Score = 209 bits (533), Expect = 3e-55, Method: Composition-based stats.
Identities = 92/130 (70%), Positives = 110/130 (84%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RKKRYHRHT QIQELEA FKECPHPD+KQR ELS+ LGLEP QVKFWFQN+RTQMK Q
Sbjct: 104 RKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQL 163
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
ERHEN+ L+ EN+KLR+EN+ +EA +NA C CGGPA +GE+S +EHHLR+ENARL+DE
Sbjct: 164 ERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENARLKDE 223
Query: 121 IDRISAIAAK 130
+ R+ A+AAK
Sbjct: 224 LSRVCALAAK 233
>Os02g0674800 Similar to OCL1 homeobox protein
Length = 804
Score = 196 bits (497), Expect = 5e-51, Method: Composition-based stats.
Identities = 88/130 (67%), Positives = 106/130 (81%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RKKRYHRHT QIQELEA FKECPHPD+KQR ELSR L L+ QVKFWFQN+RTQMKTQ
Sbjct: 98 RKKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMKTQL 157
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
ERHEN L+ EN+KLRAENM +EA+ + C +CG PA +GE+S +E HLR+ENARL+DE
Sbjct: 158 ERHENALLKQENDKLRAENMTIREAMRSPMCGSCGSPAMLGEVSLEEQHLRIENARLKDE 217
Query: 121 IDRISAIAAK 130
++R+ A+A K
Sbjct: 218 LNRVCALATK 227
>Os08g0187500 Similar to Roc1
Length = 326
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 89/96 (92%), Positives = 93/96 (96%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RKKRYHRHTQHQIQE+EAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK QH
Sbjct: 106 RKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQH 165
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGG 96
ERHEN LRAEN+KLRAENMRYKEAL++ASCPNCGG
Sbjct: 166 ERHENAQLRAENDKLRAENMRYKEALSSASCPNCGG 201
>Os10g0575600 Homeodomain-related containing protein
Length = 882
Score = 189 bits (481), Expect = 4e-49, Method: Composition-based stats.
Identities = 82/130 (63%), Positives = 106/130 (81%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
+KKRYHRHT HQIQ++EA FKECPHPDDKQR +LS+ELGL+P QVKFWFQN+RTQMK Q
Sbjct: 134 KKKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQ 193
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
+R +N LRAENE L+++N R + A+ N CPNCG A + +MS++E LR+ENARL+DE
Sbjct: 194 DRADNVILRAENENLKSDNFRLQAAIRNVVCPNCGHAAVLADMSYEEQQLRIENARLKDE 253
Query: 121 IDRISAIAAK 130
+DR++ IA +
Sbjct: 254 LDRLACIATR 263
>Os09g0526300 Similar to Homeobox protein GLABRA2 (Homeobox-leucine zipper
protein ATHB-10) (HD-ZIP protein ATHB-10)
Length = 131
Score = 189 bits (479), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 106/131 (80%), Gaps = 1/131 (0%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK-TQ 59
+KKRYHRHT QIQELEA FKECPHPD+KQR ELSR L LE QVKFWFQN+RTQMK TQ
Sbjct: 1 KKKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMKQTQ 60
Query: 60 HERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRD 119
ERHEN LR EN+KLRAENM +EA+ N C +CGG A +GE+S +E HLR+ENARL+D
Sbjct: 61 IERHENALLRQENDKLRAENMTIREAMRNPMCASCGGAAVLGEVSLEEQHLRIENARLKD 120
Query: 120 EIDRISAIAAK 130
E+DR+ A+A K
Sbjct: 121 ELDRVCALAGK 131
>Os06g0208100 Similar to Homeodomain protein HOX3
Length = 129
Score = 184 bits (468), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
R+KRYHRHT QIQ+LEA FKECPHPD+ QR +LSRELGLEP Q+KFWFQN+RTQMK QH
Sbjct: 1 RRKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMKAQH 60
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
ER +N LRAEN+K+R EN+ +EAL N CP CGGP +GE FDE LR+ENARL++E
Sbjct: 61 ERADNCFLRAENDKIRCENIAIREALKNVICPTCGGP-PVGEDYFDEQKLRMENARLKEE 119
Query: 121 IDRISAIAAK 130
+DR+S + +K
Sbjct: 120 LDRVSNLTSK 129
>Os01g0760800 Similar to Homeodomain protein 1
Length = 134
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 84/128 (65%), Gaps = 11/128 (8%)
Query: 2 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 61
+K YHRHT QI+ +EA FKE PHPD++QR+++S++LGL QVKFWFQN+RTQ+K E
Sbjct: 1 RKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIK---E 57
Query: 62 RHENNALRAENEKLRAENMRYKEALANAS-CPNCGGPAAIGEMSFD-------EHHLRLE 113
RHEN+ L++E EKL+ E+ +E S C NCG A + + E LRLE
Sbjct: 58 RHENSLLKSELEKLQDEHRAMRELAKKPSRCLNCGVVATSSDAAAAATAADTREQRLRLE 117
Query: 114 NARLRDEI 121
A+L+ E+
Sbjct: 118 KAKLKAEV 125
>Os01g0788800 Homeodomain-like containing protein
Length = 709
Score = 102 bits (253), Expect = 9e-23, Method: Composition-based stats.
Identities = 55/123 (44%), Positives = 69/123 (56%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
RK+R R T Q + LE FF C HPDD Q++ LS GL QVKFWFQNKRTQ+KT
Sbjct: 66 RKRRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVKTMC 125
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDE 120
+ EN L ENE LR EN R K A A C C + +++ + L ++ L+ E
Sbjct: 126 WKEENYKLSVENEILRDENRRVKIAHCTAVCLTCCNSSVQNQLAVEMERLMGQSEWLQQE 185
Query: 121 IDR 123
I R
Sbjct: 186 IAR 188
>Os07g0426600
Length = 196
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%)
Query: 3 KRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 62
KR RHT QI+ LE+ F+ C + QR +L+++LG+E QVKFWFQN+RT+ K ER
Sbjct: 53 KRMKRHTDDQIKHLESVFERCTYLGGNQRVQLAKKLGMEERQVKFWFQNRRTRKKMHDER 112
Query: 63 HENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDEID 122
E L+ EN+ L AEN KEA+ C CG P + +L +N RL DE+
Sbjct: 113 QEGMWLQEENDVLHAENKVLKEAMWANICFTCGSPVVPAIPTVQHRYLSFQNMRLADELQ 172
Query: 123 RISAI 127
+A+
Sbjct: 173 HATAV 177
>Os08g0292000 Homeobox domain containing protein
Length = 786
Score = 81.3 bits (199), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 1 RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 60
+ +RY T Q + L F+ CP+PD K+L++EL + Q+K+WFQN RT+MK
Sbjct: 61 KPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKKFK 120
Query: 61 ERHENNALRAENEKLRAENMRYKEALANASCPNCGGP 97
E L+ ENE+L+ EN + + N++C C P
Sbjct: 121 NNEERKLLQKENEELKKENAELRNRMKNSTCRACDLP 157
>Os03g0109400 Homeobox domain containing protein
Length = 839
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 4 RYHRHTQHQIQELEAFFKECPHPDDKQRKELSREL----GLEPLQVKFWFQNKRTQMKTQ 59
+Y R+T Q++ LE + +CP P +R++L RE +EP Q+K WFQN+R + K
Sbjct: 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDK-- 84
Query: 60 HERHENNALRAENEKLRAEN 79
+R E++ L+A N KL A N
Sbjct: 85 -QRKESSRLQAVNRKLTAMN 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,407,712
Number of extensions: 159025
Number of successful extensions: 711
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 13
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)