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Os02g0674800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to OCL1 homeobox protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0132) R2 : 0.000111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00624 (0.0278) R2dN8 : 0.000143 R2N8 : 0.000111
σ : 0.249
deviance : 28.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.19 0.216 12.3 0.134 0.23 -0.315 0.231 0.744 0.154 1 25.28 671 -- --
22.35 0.22 12.4 -0.0167 0.258 -0.291 0.362 -- 0.113 1.5 25.3 724 -- --
21.38 0.215 12.3 0.165 0.24 -0.324 -- 0.895 0.167 1.12 25.4 710 -- --
22.47 0.221 12.4 -0.0607 0.172 -0.277 -- -- 0.0925 0.333 25.3 489 -- --
24.03 0.228 12.3 0.189 -- -0.295 -- 0.945 0.158 -- 25.8 1795 -- --
24.83 0.234 12.4 -0.163 0.215 -- 0.259 -- -0.0156 3.3 -- -- -- --
25.01 0.234 12.4 -0.168 0.22 -- -- -- -0.0172 3.71 -- -- -- --
22.84 0.223 12.4 -0.0607 -- -0.252 -- -- 0.0859 -- 25.6 211 -- --
22.63 0.222 12.4 -- 0.163 -0.282 -- -- 0.108 0.376 25.3 494 -- --
27.69 0.246 12.4 -0.159 -- -- -- -- -0.0114 -- -- -- -- --
25.75 0.237 12.4 -- 0.217 -- -- -- 0.00147 3.71 -- -- -- --
23.03 0.224 12.4 -- -- -0.254 -- -- 0.0975 -- 25.69 214 -- --
28.36 0.249 12.4 -- -- -- -- -- 0.00624 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.79 temperature 15.0 90 > th dose dependent rect. 9 19
3 20.02 temperature 15.0 10 > th dose dependent rect. 9 20
8 20.31 temperature 10.0 270 > th dose dependent rect. 6 22
34 20.65 temperature 30.0 270 < th dose dependent rect. 13 20
41 20.73 temperature 30.0 270 < th dose dependent rect. 11 22
84 20.93 temperature 30.0 270 < th dose dependent rect. 1 22
92 20.96 temperature 30.0 10 < th dose dependent rect. 5 19
97 20.97 temperature 30.0 90 < th dose dependent rect. 4 20
140 21.12 precipitation 0.1 14400 > th dose independent rect. 5 6
141 21.12 temperature 25.0 720 > th dose independent rect. 7 18
142 21.12 precipitation 0.1 14400 > th dose dependent rect. 5 6
159 21.16 precipitation 0.1 14400 < th dose independent rect. 5 6
162 21.16 precipitation 0.1 14400 < th dose dependent rect. 5 6
176 21.18 temperature 25.0 720 > th dose dependent rect. 14 21
196 21.21 temperature 30.0 90 < th dose dependent rect. 3 23
252 21.30 precipitation 0.1 43200 > th dose independent rect. 9 2
254 21.30 precipitation 0.1 14400 > th dose independent rect. 2 8
260 21.30 precipitation 0.1 43200 > th dose dependent rect. 9 2
275 21.32 precipitation 0.1 14400 < th dose independent rect. 2 8
279 21.32 temperature 25.0 270 < th dose independent rect. 2 21
282 21.32 precipitation 0.1 14400 < th dose dependent rect. 2 8
290 21.33 humidity 70.0 43200 < th dose independent rect. 2 7
297 21.33 temperature 15.0 720 > th dose dependent sin 19 NA
299 21.34 precipitation 0.1 43200 < th dose independent rect. 9 2
303 21.34 temperature 15.0 270 > th dose independent rect. 6 22
304 21.34 precipitation 0.1 43200 < th dose dependent rect. 9 2
313 21.35 humidity 70.0 43200 > th dose independent rect. 3 5
324 21.35 precipitation 0.1 14400 > th dose dependent rect. 2 8
334 21.36 temperature 25.0 720 > th dose independent sin 20 NA
335 21.36 temperature 30.0 1440 > th dose independent rect. 13 2
336 21.36 humidity 70.0 43200 > th dose independent rect. 2 7
342 21.36 temperature 25.0 720 > th dose dependent sin 16 NA
359 21.37 temperature 25.0 720 > th dose independent rect. 14 23
396 21.39 temperature 25.0 720 > th dose independent rect. 16 23
415 21.40 humidity 60.0 43200 < th dose dependent rect. 10 1
421 21.40 temperature 25.0 720 > th dose dependent rect. 14 14
439 21.41 humidity 70.0 43200 < th dose dependent rect. 2 8
454 21.42 temperature 25.0 720 > th dose independent rect. 22 23
460 21.42 temperature 25.0 720 > th dose dependent rect. 14 11
471 21.43 temperature 25.0 720 > th dose independent no NA NA
479 21.43 humidity 70.0 43200 > th dose independent rect. 21 12
487 21.43 humidity 70.0 43200 < th dose dependent rect. 4 5
488 21.43 temperature 15.0 720 > th dose dependent rect. 14 6
490 21.43 temperature 25.0 720 > th dose dependent rect. 14 7
500 21.43 temperature 30.0 30 < th dose dependent rect. 19 23
506 21.44 temperature 30.0 90 < th dose dependent no NA NA
510 21.44 temperature 25.0 720 > th dose dependent rect. 14 9
527 21.45 radiation 1.0 14400 < th dose independent rect. 9 1
555 21.46 temperature 25.0 90 > th dose independent rect. 9 19
623 21.48 temperature 25.0 720 > th dose independent rect. 20 23
647 21.49 radiation 1.0 14400 > th dose independent rect. 9 1
648 21.49 temperature 30.0 1440 < th dose independent rect. 13 2
653 21.49 atmosphere 1010.0 90 < th dose independent rect. 9 19
656 21.49 temperature 25.0 720 < th dose independent rect. 7 23
673 21.49 temperature 30.0 10 < th dose dependent rect. 16 20
678 21.50 wind 9.0 14400 > th dose independent rect. 3 9
705 21.51 temperature 25.0 43200 > th dose independent rect. 11 1
706 21.51 temperature 25.0 14400 < th dose independent rect. 10 1
712 21.51 wind 9.0 14400 > th dose independent rect. 23 13
754 21.52 wind 9.0 14400 < th dose independent rect. 1 11
759 21.52 radiation 1.0 720 > th dose independent rect. 16 14
767 21.52 humidity 60.0 43200 < th dose dependent sin 8 NA
789 21.53 temperature 25.0 14400 < th dose independent rect. 9 3
795 21.53 wind 9.0 14400 > th dose independent rect. 20 17
836 21.54 temperature 25.0 720 < th dose independent no NA NA
840 21.54 temperature 25.0 14400 > th dose independent rect. 9 3
875 21.55 temperature 25.0 14400 > th dose independent rect. 7 8
888 21.55 temperature 25.0 720 < th dose independent rect. 10 23
889 21.55 temperature 25.0 720 < th dose independent rect. 14 23
931 21.56 wind 9.0 14400 < th dose independent rect. 23 13
944 21.56 temperature 20.0 14400 > th dose dependent rect. 9 1
992 21.57 temperature 25.0 14400 > th dose independent rect. 1 15
997 21.57 radiation 1.0 720 < th dose independent rect. 5 18