Os04g0627000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Roc1.
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Os04g0627000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Roc1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.35 | 0.291 | 12.9 | 0.856 | 0.793 | -0.616 | -0.743 | 0.293 | 0.698 | 6.67 | 2.532 | 261 | -- | -- |
| 38.47 | 0.289 | 12.9 | 0.853 | 0.81 | -0.579 | -0.786 | -- | 0.698 | 6.41 | 7.23 | 256 | -- | -- |
| 39.71 | 0.294 | 12.9 | 0.843 | 0.786 | -0.629 | -- | 0.362 | 0.699 | 6.81 | 1.474 | 260 | -- | -- |
| 40 | 0.295 | 12.9 | 0.846 | 0.797 | -0.632 | -- | -- | 0.7 | 6.8 | 2.879 | 247 | -- | -- |
| 53.34 | 0.34 | 12.9 | 0.927 | -- | -1.15 | -- | 1.1 | 0.783 | -- | -0.004732 | 556 | -- | -- |
| 43.72 | 0.31 | 12.9 | 0.824 | 1.01 | -- | -0.855 | -- | 0.651 | 5.39 | -- | -- | -- | -- |
| 45.53 | 0.316 | 12.9 | 0.822 | 1.01 | -- | -- | -- | 0.655 | 5.41 | -- | -- | -- | -- |
| 54.71 | 0.345 | 12.9 | 0.898 | -- | -1.13 | -- | -- | 0.77 | -- | -1.145 | 547 | -- | -- |
| 58.66 | 0.357 | 12.9 | -- | 0.841 | -0.566 | -- | -- | 0.601 | 6.56 | 3.971 | 229 | -- | -- |
| 98.56 | 0.464 | 12.9 | 0.856 | -- | -- | -- | -- | 0.679 | -- | -- | -- | -- | -- |
| 63.33 | 0.372 | 12.9 | -- | 1.02 | -- | -- | -- | 0.563 | 5.38 | -- | -- | -- | -- |
| 75.92 | 0.406 | 12.9 | -- | -- | -1.1 | -- | -- | 0.667 | -- | -1.151 | 536 | -- | -- |
| 117.88 | 0.507 | 13 | -- | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.58 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 5 | 33.96 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 9 | 34.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 11 | 34.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 15 | 34.25 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 7 |
| 16 | 34.27 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 18 | 34.30 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 22 | 34.39 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 23 | 34.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 31 | 34.50 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 47 | 34.64 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 87 | 34.96 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 123 | 35.11 | radiation | 1.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 131 | 35.18 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 146 | 35.24 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 160 | 35.28 | humidity | 70.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 169 | 35.32 | humidity | 80.0 | 270 | < th | dose independent | rect. | 3 | 13 |
| 175 | 35.34 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 181 | 35.35 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 203 | 35.46 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 204 | 35.47 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 224 | 35.54 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 232 | 35.56 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 9 |
| 243 | 35.58 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 246 | 35.59 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 260 | 35.62 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 261 | 35.62 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 277 | 35.65 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 282 | 35.67 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 286 | 35.68 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 6 |
| 292 | 35.68 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 294 | 35.69 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 295 | 35.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 296 | 35.69 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 297 | 35.69 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 300 | 35.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 305 | 35.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 306 | 35.70 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 315 | 35.73 | radiation | 1.0 | 90 | > th | dose independent | sin | 9 | NA |
| 316 | 35.73 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 322 | 35.73 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 336 | 35.77 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 337 | 35.78 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 7 |
| 345 | 35.79 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 349 | 35.80 | humidity | 70.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 375 | 35.85 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 413 | 35.94 | humidity | 80.0 | 270 | < th | dose independent | sin | 2 | NA |
| 423 | 35.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 7 |
| 425 | 35.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 434 | 35.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 438 | 36.00 | humidity | 80.0 | 270 | > th | dose independent | sin | 2 | NA |
| 481 | 36.10 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 483 | 36.10 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 502 | 36.14 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 523 | 36.16 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 532 | 36.18 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 538 | 36.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 539 | 36.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 540 | 36.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 543 | 36.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 544 | 36.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 549 | 36.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 560 | 36.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 562 | 36.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 566 | 36.20 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 569 | 36.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 18 |
| 572 | 36.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 574 | 36.22 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 592 | 36.24 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 595 | 36.24 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 614 | 36.28 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 616 | 36.28 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 637 | 36.31 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 647 | 36.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 649 | 36.32 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 657 | 36.33 | humidity | 80.0 | 10 | < th | dose independent | rect. | 10 | 8 |
| 659 | 36.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 665 | 36.34 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 724 | 36.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 725 | 36.41 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 730 | 36.42 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 8 |
| 744 | 36.44 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 10 | 19 |
| 746 | 36.45 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 758 | 36.47 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 760 | 36.47 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 761 | 36.47 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 764 | 36.47 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 17 |
| 770 | 36.48 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 7 |
| 772 | 36.48 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 17 |
| 775 | 36.48 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 778 | 36.48 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 793 | 36.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 846 | 36.54 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 849 | 36.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 3 |
| 850 | 36.55 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 15 |
| 851 | 36.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 859 | 36.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 869 | 36.57 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 908 | 36.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 909 | 36.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 910 | 36.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 911 | 36.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 914 | 36.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 915 | 36.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 922 | 36.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 923 | 36.63 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 936 | 36.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 15 |
| 937 | 36.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 972 | 36.69 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 973 | 36.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 979 | 36.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 996 | 36.72 | wind | 9.0 | 90 | < th | dose dependent | rect. | 23 | 6 |