Os03g0109400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeobox domain containing protein.
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Os03g0109400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeobox domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.34 | 0.271 | 10.1 | -0.777 | 0.891 | 0.21 | 0.485 | 0.668 | 0.0692 | 2.65 | 1005 | 352 | -- | -- |
| 35.41 | 0.277 | 10.1 | -0.78 | 0.894 | 0.214 | 0.431 | -- | 0.051 | 2.68 | 1006 | 411 | -- | -- |
| 34.1 | 0.272 | 10.1 | -0.778 | 0.89 | 0.213 | -- | 0.65 | 0.0637 | 2.55 | 1006 | 361 | -- | -- |
| 36.03 | 0.28 | 10.1 | -0.794 | 0.892 | 0.232 | -- | -- | 0.0341 | 2.6 | 1006 | 411 | -- | -- |
| 77.56 | 0.41 | 10.1 | -0.788 | -- | 0.297 | -- | 0.653 | 0.0271 | -- | 1006 | 136 | -- | -- |
| 39.08 | 0.293 | 10.1 | -0.785 | 0.912 | -- | 0.505 | -- | 0.136 | 2.85 | -- | -- | -- | -- |
| 39.94 | 0.296 | 10.1 | -0.797 | 0.912 | -- | -- | -- | 0.133 | 2.78 | -- | -- | -- | -- |
| 79.77 | 0.416 | 10.1 | -0.753 | -- | 0.315 | -- | -- | 0.0186 | -- | 1006 | 89 | -- | -- |
| 52.68 | 0.338 | 10.1 | -- | 0.872 | 0.227 | -- | -- | 0.126 | 2.58 | 1006 | 362 | -- | -- |
| 88.22 | 0.439 | 10.1 | -0.758 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 56.67 | 0.352 | 10.1 | -- | 0.897 | -- | -- | -- | 0.222 | 2.77 | -- | -- | -- | -- |
| 94.66 | 0.453 | 10.1 | -- | -- | 0.32 | -- | -- | 0.0947 | -- | 1006 | 87 | -- | -- |
| 103.37 | 0.475 | 10.1 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.63 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 18 |
| 7 | 30.27 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 18 |
| 11 | 30.63 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 15 | 30.71 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 22 | 30.98 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 24 | 30.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 33 | 31.13 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 7 |
| 49 | 31.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 60 | 31.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 119 | 31.95 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 121 | 31.97 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 132 | 32.03 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 9 |
| 151 | 32.14 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 15 |
| 162 | 32.18 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 16 |
| 170 | 32.21 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 18 |
| 171 | 32.21 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 13 | 19 |
| 178 | 32.24 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 12 | 21 |
| 215 | 32.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 238 | 32.40 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 246 | 32.42 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 18 |
| 247 | 32.42 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 248 | 32.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 268 | 32.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 297 | 32.58 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 310 | 32.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 324 | 32.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 338 | 32.65 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 17 |
| 341 | 32.66 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 8 |
| 363 | 32.71 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 388 | 32.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 426 | 32.83 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 429 | 32.84 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 19 |
| 437 | 32.84 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 438 | 32.84 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 539 | 32.99 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 560 | 33.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 593 | 33.06 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 16 |
| 614 | 33.08 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 620 | 33.08 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 621 | 33.08 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 666 | 33.13 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 18 |
| 692 | 33.15 | radiation | 30 | 270 | < th | dose independent | rect. | 14 | 16 |
| 699 | 33.16 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 7 |
| 733 | 33.18 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 743 | 33.19 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 744 | 33.19 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 760 | 33.20 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 766 | 33.21 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 772 | 33.22 | temperature | 25 | 30 | > th | dose dependent | sin | 3 | NA |
| 788 | 33.23 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 866 | 33.30 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 869 | 33.30 | wind | 1 | 270 | > th | dose independent | rect. | 8 | 17 |
| 870 | 33.30 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 19 |
| 881 | 33.30 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 984 | 33.39 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 18 |