BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0109400 Os03g0109400|AK102378
(839 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0109400 Homeobox domain containing protein 1677 0.0
Os10g0480200 Similar to Rolled leaf1 1483 0.0
Os03g0640800 Similar to HD-Zip protein (Homeodomain transcr... 1149 0.0
Os12g0612700 Similar to HD-Zip protein (Homeodomain transcr... 1111 0.0
Os01g0200300 Hypothetical protein 378 e-104
Os06g0722500 164 3e-40
Os06g0720500 Similar to CORONA 154 3e-37
Os03g0769800 Similar to Homeodomain-leucine zipper protein ... 97 6e-20
Os08g0426000 80 6e-15
Os01g0788800 Homeodomain-like containing protein 75 2e-13
Os10g0147300 Similar to HD-Zip protein (Homeodomain-leucine... 72 2e-12
Os09g0526300 Similar to Homeobox protein GLABRA2 (Homeobox-... 69 2e-11
>Os03g0109400 Homeobox domain containing protein
Length = 839
Score = 1677 bits (4343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 813/839 (96%), Positives = 813/839 (96%)
Query: 1 MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRE 60
MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRE
Sbjct: 1 MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRE 60
Query: 61 CPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQL 120
CPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQL
Sbjct: 61 CPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQL 120
Query: 121 VHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGT 180
VHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGT
Sbjct: 121 VHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGT 180
Query: 181 AIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRN 240
AIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRN
Sbjct: 181 AIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRN 240
Query: 241 LEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLXXXXX 300
LEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSL
Sbjct: 241 LEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGG 300
Query: 301 XXXXXXXQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVA 360
QQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVA
Sbjct: 301 GPSAASAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVA 360
Query: 361 QKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMG 420
QKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMG
Sbjct: 361 QKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMG 420
Query: 421 GDGVEDVVIACNSTKKIRSNSNXXXXXXXXXXXXXXKASMLLQSVPPAVLVRFLREHRSE 480
GDGVEDVVIACNSTKKIRSNSN KASMLLQSVPPAVLVRFLREHRSE
Sbjct: 421 GDGVEDVVIACNSTKKIRSNSNAGIAFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSE 480
Query: 481 WADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTH 540
WADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTH
Sbjct: 481 WADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTH 540
Query: 541 DEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGA 600
DEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGA
Sbjct: 541 DEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGA 600
Query: 601 SSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYV 660
SSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYV
Sbjct: 601 SSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYV 660
Query: 661 RSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGD 720
RSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGD
Sbjct: 661 RSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGD 720
Query: 721 AEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEA 780
AEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEA
Sbjct: 721 AEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEA 780
Query: 781 LFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV 839
LFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV
Sbjct: 781 LFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV 839
>Os10g0480200 Similar to Rolled leaf1
Length = 840
Score = 1483 bits (3838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/843 (85%), Positives = 770/843 (91%), Gaps = 7/843 (0%)
Query: 1 MAAAVAMRGSSSDGGG---YDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQL 57
MAAAVAMR S GG YDK +GMDSGKYVRYTPEQVEALERVYA+CPKP+SSRRQQL
Sbjct: 1 MAAAVAMRSGSGSDGGGGGYDK-AGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQL 59
Query: 58 LRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQV 117
LR+CPILANIEPKQIKVWFQNRRCRDKQRKE+SRLQAVNRKLTAMNKLLMEENERLQKQV
Sbjct: 60 LRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQV 119
Query: 118 SQLVHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKA 177
SQLVHENA+M+QQLQN L NDTSCESNVTTPQNPLRDASNPSGLL+IAEETLTEFLSKA
Sbjct: 120 SQLVHENAYMKQQLQNPSLGNDTSCESNVTTPQNPLRDASNPSGLLTIAEETLTEFLSKA 179
Query: 178 TGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRD 237
TGTA+DWV MPGMKPGPDS GIVA+SHGCRGVAARACGLVNLEPTK+VEILKDRPSWFRD
Sbjct: 180 TGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRD 239
Query: 238 CRNLEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLXX 297
CR+LEVFTM PAGNGGT+ELVY Q+YAPTTLVPARDFWTLRYTTTMEDGSLVVCERSL
Sbjct: 240 CRSLEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSG 299
Query: 298 XXXXXXXXXXQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 357
QQ+VRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR
Sbjct: 300 SGGGPSTASAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 359
Query: 358 VVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWS 417
VVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWS
Sbjct: 360 VVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWS 419
Query: 418 IMGGDGVEDVVIACNSTKKIRSNSNXXXXXXXXXXXXXXKASMLLQSVPPAVLVRFLREH 477
+MGGDG+EDV+IACN+ KK+R+ S KASMLLQSVPPAVLVRFLREH
Sbjct: 420 VMGGDGIEDVIIACNA-KKVRNTSTSANAFVTPGGVICAKASMLLQSVPPAVLVRFLREH 478
Query: 478 RSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQP 537
RSEWADYN DAY AS+LKTS+CSL GLRPMRFSGSQII+PLAHTVENEEILEVVRLEGQ
Sbjct: 479 RSEWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLAHTVENEEILEVVRLEGQA 538
Query: 538 LTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDD-FPDETPLISSGFRVIPLDMK 596
LTHD+ L+SRDIHLLQLCTGIDEKS+GS FQLV APID+ FPD+ PLISSGFRVIPLDMK
Sbjct: 539 LTHDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVSAPIDELFPDDAPLISSGFRVIPLDMK 598
Query: 597 TDGASSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMA 656
TDG +GRTLDLASSLEVGS TAQ +GDAS DDCNLRSVLTIAFQFPYE+HLQDSVA MA
Sbjct: 599 TDGTPAGRTLDLASSLEVGS-TAQPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMA 657
Query: 657 RQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQ 716
RQYVRSIVS+VQRVSMAISPS++GLNAGQ+IISGFPEA TLARW+CQSY +HLGVELL Q
Sbjct: 658 RQYVRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQ 717
Query: 717 SDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEP 776
+D E LLKMLW Y+DAILCCSFKEKPVFTFAN+ GL+MLETSLVALQDL+LD+IFDE
Sbjct: 718 ADDAGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEA 777
Query: 777 GKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNW 836
G++AL++ IPKLMEQG+VYLP GVC+SGMGRHVSF+QAVAWKVL ED+NVHCLAFCFVNW
Sbjct: 778 GRKALYNEIPKLMEQGYVYLPGGVCLSGMGRHVSFEQAVAWKVLGEDNNVHCLAFCFVNW 837
Query: 837 SFV 839
SFV
Sbjct: 838 SFV 840
>Os03g0640800 Similar to HD-Zip protein (Homeodomain transcription factor)
(ATHB-14) (Homeodomain-leucine zipper protein 14)
Length = 859
Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/846 (66%), Positives = 672/846 (79%), Gaps = 20/846 (2%)
Query: 10 SSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEP 69
SS GGG +V D+GKYVRYTPEQVEALERVY +CPKP+S RRQQL+RECPIL+NIEP
Sbjct: 18 SSPGGGGAPQV---DTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEP 74
Query: 70 KQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQ 129
KQIKVWFQNRRCR+KQRKE+SRLQ VNRKLTAMNKLLMEEN+RLQKQVS+LV+EN +MRQ
Sbjct: 75 KQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQ 134
Query: 130 QLQNTPLAN-DTSCESNVTTPQN----------PLRDASNPSGLLSIAEETLTEFLSKAT 178
QL N +A DTSCES VT+ Q+ P RDA+NP+GLL+IAEETL EFLSKAT
Sbjct: 135 QLHNPSVATTDTSCESVVTSGQHHQQQNPAATRPQRDANNPAGLLAIAEETLAEFLSKAT 194
Query: 179 GTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDC 238
GTA+DWVQM GMKPGPDS+GI+A+SH C GVAARACGLV+LEPTKV EILKDRPSW+RDC
Sbjct: 195 GTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDC 254
Query: 239 RNLEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLXXX 298
R ++V +IP GNGGT+EL+Y Q YAPTTL RDFW LRYT+ +EDGSLV+CERSL
Sbjct: 255 RCVDVLHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWILRYTSGLEDGSLVICERSLTQS 314
Query: 299 XXXXXXXXXQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRV 358
+VRAE+LPSGYL+RPCEGGGS++HIVDH+DL+AWSVPEVLRPLYES ++
Sbjct: 315 TGGPSGPNTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKI 374
Query: 359 VAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSI 418
+AQKMT AALRHIRQIA E+SGE+ Y GRQPAVLRTFSQRLSRGFNDA++GF DDGWS+
Sbjct: 375 LAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSL 434
Query: 419 MGGDGVEDVVIACNST--KKIRSNSNXXXXXXXXXXXXX-XKASMLLQSVPPAVLVRFLR 475
M DG EDV IA NS+ K + S+ N KASMLLQ+VPPA+LVRFLR
Sbjct: 435 MSSDGAEDVTIAFNSSPNKLVGSHVNSSQLFSAIGGGILCAKASMLLQNVPPALLVRFLR 494
Query: 476 EHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEG 535
EHRSEWAD +DAY A+ L+ S ++ GLR F GSQ+I+PLAHT+E+EE LEV+RLEG
Sbjct: 495 EHRSEWADPGVDAYSAAALRASPYAVPGLRAGGFMGSQVILPLAHTLEHEEFLEVIRLEG 554
Query: 536 QPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDD-FPDETPLISSGFRVIPLD 594
L HDE +LSRD++LLQLC+G+DE + G+ QLVFAPID+ F D+ PL+ SGFRVIPLD
Sbjct: 555 HSLCHDEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLD 614
Query: 595 MKTDGASSGRTLDLASSLEVGS-ATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVA 653
KTD S+ RTLDLAS+LEVGS T +AS D S+ CN RSVLTIAFQF YE HL++SVA
Sbjct: 615 GKTDAPSATRTLDLASTLEVGSGGTTRASSDTSS-TCNTRSVLTIAFQFSYENHLRESVA 673
Query: 654 AMARQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVEL 713
AMARQYVR++V++VQRV+MAI+PS+ G + G PEA TLARW+ +SY +H G +L
Sbjct: 674 AMARQYVRTVVASVQRVAMAIAPSRLGGQIETKNPPGSPEAHTLARWIGRSYRFHTGADL 733
Query: 714 LSQSDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIF 773
L + LK +W + D+I+CCS K PVFTFAN+AGLDMLET+L+ALQD++L++I
Sbjct: 734 LRTDSQSTDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKIL 793
Query: 774 DEPGKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCF 833
D+ G++AL + PK+M+QG YLP GVC+S MGR VS++QAVAWKVL++D HCLAF F
Sbjct: 794 DDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMF 853
Query: 834 VNWSFV 839
VNWSFV
Sbjct: 854 VNWSFV 859
>Os12g0612700 Similar to HD-Zip protein (Homeodomain transcription factor)
(ATHB-14) (Homeodomain-leucine zipper protein 14)
Length = 855
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/857 (63%), Positives = 662/857 (77%), Gaps = 23/857 (2%)
Query: 2 AAAVAMRG----SSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQL 57
AAAV RG SSS +V D+GKYVRYTPEQVEALERVY +CPKP+S RRQQL
Sbjct: 3 AAAVGGRGERLSSSSPTAAAPQV---DAGKYVRYTPEQVEALERVYTECPKPSSLRRQQL 59
Query: 58 LRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQV 117
+RECPIL+NIEPKQIKVWFQNRRCR+KQRKE+SRLQ VNRKL AMNKLLMEEN+RLQKQV
Sbjct: 60 IRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQV 119
Query: 118 SQLVHENAHMRQQLQNTPLAN-DTSCESNVTTPQN----------PLRDASNPSGLLSIA 166
S+LV+EN +MR QL N A DTSCES VT+ Q+ P RDA+NP+GLL+IA
Sbjct: 120 SRLVYENGYMRTQLHNPSAATTDTSCESVVTSGQHHQQQNPAVLHPQRDANNPAGLLAIA 179
Query: 167 EETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVE 226
EETL EF+SKATGTA++WVQM GMKPGPDS+GI+A+SH C GVAARACGLV+LEPTKV E
Sbjct: 180 EETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAE 239
Query: 227 ILKDRPSWFRDCRNLEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDG 286
ILKDRPSW+RDCR +++ +IP GNGGT+EL+Y Q YAPTTL RDFWTLRYT+ +EDG
Sbjct: 240 ILKDRPSWYRDCRCVDIIHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWTLRYTSGLEDG 299
Query: 287 SLVVCERSLXXXXXXXXXXXXQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVP 346
SLV+CERSL ++RAE+LPSGYL+RPCEGGGS+++IVDH+DL+AWSVP
Sbjct: 300 SLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVP 359
Query: 347 EVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFND 406
EVLRPLYES +++AQKMT AALRHIRQIA E+SGE+ Y GRQPAV RTFSQRLSRGFND
Sbjct: 360 EVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFND 419
Query: 407 AISGFNDDGWSIMGGDGVEDVVIACNST--KKIRSN-SNXXXXXXXXXXXXXXKASMLLQ 463
A+SGF DDGWS++ DG ED+ I+ NS+ K + S+ S KASMLLQ
Sbjct: 420 AVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILCAKASMLLQ 479
Query: 464 SVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVE 523
+VPPA+LVRFLREHRSEWAD +DAY A++L+ S ++ GLR F GSQ+I+PLAHT+E
Sbjct: 480 NVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLAHTLE 539
Query: 524 NEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDD-FPDETP 582
+EE LEV+RLEG +HDE LLSRD++LLQLC+G+DE + +S QLVFAPID+ F D+ P
Sbjct: 540 HEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAP 599
Query: 583 LISSGFRVIPLDMKTDGASSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQF 642
L+ SGFRVIPLD K DG S+ RTLDLAS+LEVG A + ++ CN RSVLTIAFQF
Sbjct: 600 LLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCN-RSVLTIAFQF 658
Query: 643 PYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVC 702
YE HL++SVAAMAR YVR+++++VQRV++AI+PS+ G G + PEA TLA W+
Sbjct: 659 SYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIG 718
Query: 703 QSYHYHLGVELLSQSDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLV 762
+SY H G ++ DA+ L +LW + DAILCCS K P+FTFAN AGLD+LET+LV
Sbjct: 719 RSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLV 778
Query: 763 ALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAE 822
LQD++L+ I D+ G++AL S PK+M+QG YLP GVC S MGR S++QAVAWKVL++
Sbjct: 779 NLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSD 838
Query: 823 DSNVHCLAFCFVNWSFV 839
D HCLAF VNW+F+
Sbjct: 839 DDAPHCLAFMLVNWTFM 855
>Os01g0200300 Hypothetical protein
Length = 394
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 277/396 (69%), Gaps = 18/396 (4%)
Query: 460 MLLQSVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLA 519
MLLQ V P L++FLREHRS+WAD N+DA+ AST+K + C+L R FSG Q+I+PLA
Sbjct: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
Query: 520 HTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPID-DFP 578
HT E EE LEV++L G + + L+ RD+ LLQ+ G++E S G+ +L+FAPID F
Sbjct: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
Query: 579 DETPLISSGFRVIPLDMKTDGASSGRTLDLASSLEVGSATAQ--------ASGDASADDC 630
D++PL+ SGFR+IP+D D +S TLDLAS+LE + ++ A+A
Sbjct: 119 DDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASS 178
Query: 631 NLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQ----TGLNAGQR 686
+ ++V+TIAFQF ++ HLQDSVAAMARQY+R+I+S+VQR+++A+S S+ A +
Sbjct: 179 SSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
Query: 687 IISGFPEAATLARWVCQSYHYHLGVELLSQSDGDA--EQLLKMLWHYQDAILCCSFKEKP 744
+ PEAATL RW+CQSY +H G EL+ D ++ E +LK +WH+ AILCCS K P
Sbjct: 239 LSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMP 298
Query: 745 VFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSG 804
VFTFAN++GLDMLET+LVALQD+TL+++FD+ G++ L + +P +MEQG + GVC+S
Sbjct: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSS 358
Query: 805 MGRHVSFDQAVAWKVLAED-SNVHCLAFCFVNWSFV 839
+GR S+++AVAWKV+ D HC+ F F+NW+F+
Sbjct: 359 VGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
>Os06g0722500
Length = 427
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 269 VPARDFWTLRYTTTMEDGSLVVCERSLXXXXXXXXXXXXQQYVRAEMLPSGYLVRPCEGG 328
+PA +L + +L VCERSL Q ++R EMLPSG+L+RP +GG
Sbjct: 55 MPADGDGSLHLRIPHQHAALQVCERSLSSKQGGPSMPLVQPFIRDEMLPSGFLIRPSDGG 114
Query: 329 GSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGR 388
GS++HIVDH+DLE WSVPEV+RPLYESS +VAQK++ A+LR +RQ+A + + V+ GR
Sbjct: 115 GSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASLRCLRQVAYKDTRSVITGWGR 174
Query: 389 QPAVLRTFSQR-------------------------------LSRGFNDAISGFNDDGWS 417
+ A L SQ+ L RGFN+ ++G DDGWS
Sbjct: 175 KLAALHALSQKAHHVGLLNSRCFLVLAMNLQFKSVKNNFACSLFRGFNEVLNGLADDGWS 234
Query: 418 IMGGDGVEDVVIACNSTKKIRSNSNXXXXXXXXXXXXX-XKASMLLQ 463
++ DG++DV I+ NS+K N+ KASMLLQ
Sbjct: 235 VIESDGIDDVCISVNSSKVTGCNATFSSGLTIVSTGVLCAKASMLLQ 281
>Os06g0720500 Similar to CORONA
Length = 138
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 83/106 (78%)
Query: 261 QLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLXXXXXXXXXXXXQQYVRAEMLPSGY 320
QLYAPTTL PA DFW LRYT+ + DGSLVVCERSL Q ++R EMLPSG+
Sbjct: 31 QLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSGF 90
Query: 321 LVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTA 366
L+RP +GGGS++HIVDH+DLE WSVPEV+RPLYESS +VAQK++ A
Sbjct: 91 LIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMA 136
>Os03g0769800 Similar to Homeodomain-leucine zipper protein interfascicular
fiberless 1 (Revoluta)
Length = 242
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 61/87 (70%), Gaps = 9/87 (10%)
Query: 17 YDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQ-IKVW 75
YDK +GMDSGKYV YTP QVEALERVYA+CPKP SRRQQLL E ILANIEPKQ IKVW
Sbjct: 159 YDK-AGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQKIKVW 217
Query: 76 FQNRRCRDKQRKESSRLQAVNRKLTAM 102
F ++K S +Q KL +
Sbjct: 218 F-------PKQKVSKSMQGYTIKLVCL 237
>Os08g0426000
Length = 249
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 42/51 (82%), Gaps = 4/51 (7%)
Query: 23 MDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIK 73
++ G Y P +VEALERVY DCPKPTS+RRQQLL ECPILANIEPKQIK
Sbjct: 101 LEGGTY----PLEVEALERVYTDCPKPTSARRQQLLCECPILANIEPKQIK 147
>Os01g0788800 Homeodomain-like containing protein
Length = 709
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/466 (21%), Positives = 189/466 (40%), Gaps = 81/466 (17%)
Query: 30 RYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQR--K 87
R T +Q E LE ++ C P +++ L + Q+K WFQN+R + K K
Sbjct: 72 RLTGKQSEVLEGFFSICGHPDDGQKRHLSET----TGLGLDQVKFWFQNKRTQVKTMCWK 127
Query: 88 ESSRLQAVNRKLTAMNKLLMEENER---------------------LQKQVSQLVHENAH 126
E N KL+ N++L +EN R L ++ +L+ ++
Sbjct: 128 EE------NYKLSVENEILRDENRRVKIAHCTAVCLTCCNSSVQNQLAVEMERLMGQSEW 181
Query: 127 MRQQL---QNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGTAID 183
++Q++ TP A + + + N ++ + + +A+ + + A
Sbjct: 182 LQQEIARSNGTPPAANLAFQLN-SSADYVFSGQHDQQMIAELAKNAMHALIILAESHVAL 240
Query: 184 WVQMPGMK-------------PGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKD 230
W +PG PG +S + G + A RA +V ++ VV+ L D
Sbjct: 241 WFPVPGCSYEVLNKMAYDQAYPGDNSANAI----GFKTEATRAVSMVMMDYKSVVDFLMD 296
Query: 231 ---RPSWFRDCRNLEVFTMI---PAGNG--GTVELVYTQLYAPTTLVPARDFWTLRYTTT 282
++F + + V I P +G G ++L+ ++ P+ LVPAR LRY
Sbjct: 297 PYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQLMTVEMMFPSPLVPARKCTFLRYCNV 356
Query: 283 MEDGSLVVCERSLXXXXXXXXXXXXQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEA 342
+ +G +VV + SL + + +PSG+L++ V ++H+ +
Sbjct: 357 LNEGLVVVIDVSLDDGSI---------FSKCRKMPSGFLIQSIRPNSCKVTAIEHVLADD 407
Query: 343 WSVPEVLRP-----LYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFS 397
V E+ +P ++ + R VA +A +R + + V GR+ L +
Sbjct: 408 TGVHELYQPCMNGLVFGARRWVATMARQSA--RMRDVHHNKTAPQVSTKGRKN--LMKLA 463
Query: 398 QRLSRGFNDAISGFNDDGWSIMGGDGVE-DVVIACNSTKKIRSNSN 442
L F I+ W+++ G G E D+ +A T + S+ N
Sbjct: 464 DDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSYN 509
>Os10g0147300 Similar to HD-Zip protein (Homeodomain-leucine zipper protein)
Length = 108
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 37/40 (92%), Gaps = 1/40 (2%)
Query: 17 YDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQ 56
YDK +GMDSGKYV+YTP+QVEALERVYA+CPKP+ RRQQ
Sbjct: 41 YDK-AGMDSGKYVQYTPDQVEALERVYAECPKPSFCRRQQ 79
>Os09g0526300 Similar to Homeobox protein GLABRA2 (Homeobox-leucine zipper
protein ATHB-10) (HD-ZIP protein ATHB-10)
Length = 131
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQ- 85
+Y R+TP+Q++ LE V+ +CP P +R +L R N+E +Q+K WFQNRR + KQ
Sbjct: 4 RYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRL----NLESRQVKFWFQNRRTQMKQT 59
Query: 86 ---RKESSRLQAVNRKLTAMNKLLME 108
R E++ L+ N KL A N + E
Sbjct: 60 QIERHENALLRQENDKLRAENMTIRE 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,944,870
Number of extensions: 1146281
Number of successful extensions: 3074
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 3073
Number of HSP's successfully gapped: 12
Length of query: 839
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 730
Effective length of database: 11,344,475
Effective search space: 8281466750
Effective search space used: 8281466750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)