Os10g0147300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HD-Zip protein (Homeodomain-leucine zipper protein).
FiT-DB / Search/ Help/ Sample detail
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Os10g0147300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HD-Zip protein (Homeodomain-leucine zipper protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.25 | 0.34 | 10.4 | 0.309 | 0.876 | 1.2 | -0.541 | 2.6 | 0.169 | 21.3 | 6.806 | 365 | -- | -- |
| 56.17 | 0.349 | 10.5 | -0.0791 | 0.855 | 1.12 | -0.415 | -- | 0.0599 | 20.9 | 17.46 | 486 | -- | -- |
| 53.2 | 0.34 | 10.4 | 0.312 | 0.9 | 1.18 | -- | 2.49 | 0.169 | 21.4 | 7.42 | 334 | -- | -- |
| 54.62 | 0.344 | 10.5 | -0.0532 | 0.899 | 1.04 | -- | -- | 0.0529 | 21.7 | 20.99 | 307 | -- | -- |
| 85.41 | 0.43 | 10.4 | 0.0587 | -- | 1.85 | -- | 1.84 | 0.0362 | -- | 8.316 | 593 | -- | -- |
| 73.96 | 0.403 | 10.4 | 0.188 | 1.12 | -- | -0.052 | -- | 0.241 | 20.3 | -- | -- | -- | -- |
| 73.97 | 0.403 | 10.4 | 0.189 | 1.12 | -- | -- | -- | 0.241 | 20.3 | -- | -- | -- | -- |
| 85.38 | 0.43 | 10.5 | -0.184 | -- | 1.5 | -- | -- | -0.0304 | -- | 20.42 | 587 | -- | -- |
| 54.65 | 0.344 | 10.5 | -- | 0.903 | 1.02 | -- | -- | 0.0679 | 21.6 | 21.1 | 304 | -- | -- |
| 143.22 | 0.559 | 10.4 | 0.182 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 74.91 | 0.405 | 10.4 | -- | 1.12 | -- | -- | -- | 0.22 | 20.3 | -- | -- | -- | -- |
| 86.19 | 0.432 | 10.5 | -- | -- | 1.45 | -- | -- | -0.00176 | -- | 20.71 | 588 | -- | -- |
| 144.09 | 0.56 | 10.4 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 2 | 46.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 13 | 47.23 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 47.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 26 | 47.72 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 98 | 48.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 144 | 49.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 204 | 50.25 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 242 | 50.60 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 326 | 51.37 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 8 |
| 351 | 51.58 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 10 |
| 411 | 51.92 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 18 |
| 550 | 52.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 557 | 52.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 574 | 52.76 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 588 | 52.81 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 646 | 53.04 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 738 | 53.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 740 | 53.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 741 | 53.43 | temperature | 25 | 720 | < th | dose independent | sin | 6 | NA |
| 785 | 53.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 877 | 53.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 883 | 53.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 897 | 54.00 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 954 | 54.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |