Os06g0720500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CORONA.
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Os06g0720500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CORONA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.94 | 0.404 | 9.98 | -1.28 | 0.327 | -0.0433 | -0.829 | -2.68 | 0.284 | 8.35 | 37.69 | 699 | -- | -- |
| 82.09 | 0.425 | 9.97 | -1.14 | 0.359 | 0.366 | -0.163 | -- | 0.325 | 7.71 | 31.6 | 1237 | -- | -- |
| 75.23 | 0.404 | 9.97 | -1.27 | 0.314 | -0.0653 | -- | -2.56 | 0.299 | 8.38 | 44.82 | 623 | -- | -- |
| 76.98 | 0.409 | 9.94 | -0.869 | 0.38 | 0.88 | -- | -- | 0.478 | 7.9 | 67.95 | 1700 | -- | -- |
| 80.05 | 0.417 | 9.99 | -1.31 | -- | -0.199 | -- | -2.73 | 0.302 | -- | 42.7 | 623 | -- | -- |
| 84.03 | 0.43 | 9.97 | -1.15 | 0.389 | -- | -0.282 | -- | 0.32 | 8.53 | -- | -- | -- | -- |
| 84.27 | 0.43 | 9.97 | -1.16 | 0.392 | -- | -- | -- | 0.32 | 8.34 | -- | -- | -- | -- |
| 83.33 | 0.425 | 9.96 | -0.848 | -- | 1.23 | -- | -- | 0.414 | -- | 66.49 | 1658 | -- | -- |
| 89.61 | 0.441 | 9.95 | -- | 0.322 | 1.45 | -- | -- | 0.474 | 8.36 | 67.29 | 5933 | -- | -- |
| 92.79 | 0.45 | 9.98 | -1.15 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 119.49 | 0.511 | 9.94 | -- | 0.387 | -- | -- | -- | 0.449 | 8.56 | -- | -- | -- | -- |
| 91.04 | 0.444 | 9.91 | -- | -- | 1.3 | -- | -- | 0.515 | -- | 69.65 | 5995 | -- | -- |
| 127.9 | 0.528 | 9.95 | -- | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.86 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 2 | 70.90 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 3 | 70.98 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 7 | 71.24 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 8 | 71.25 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 9 | 71.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 13 | 71.43 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 16 | 71.54 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 21 | 71.66 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 28 | 71.80 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 45 | 71.81 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 79 | 72.54 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 82 | 72.59 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 84 | 72.62 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 85 | 72.63 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 86 | 72.64 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 89 | 72.64 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 96 | 72.75 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 98 | 72.77 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 107 | 72.87 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 110 | 72.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 111 | 72.88 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 154 | 73.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 155 | 73.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 168 | 73.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 178 | 73.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 181 | 73.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 183 | 73.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 185 | 73.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 196 | 73.34 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 199 | 73.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 200 | 73.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 201 | 73.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 202 | 73.36 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 204 | 73.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 206 | 73.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 211 | 73.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 212 | 73.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 218 | 73.43 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 227 | 73.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 236 | 73.49 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 246 | 73.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 17 |
| 252 | 73.55 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 254 | 73.55 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 257 | 73.55 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 260 | 73.56 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 297 | 73.69 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 305 | 73.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 312 | 73.74 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 9 |
| 318 | 73.75 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 320 | 73.75 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 351 | 73.86 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 3 | NA |
| 352 | 73.86 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 3 | NA |
| 353 | 73.87 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 3 | NA |
| 359 | 73.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 360 | 73.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 364 | 73.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 3 |
| 386 | 73.93 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 389 | 73.95 | radiation | 40.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 396 | 73.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 400 | 73.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 404 | 73.99 | radiation | 1.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 411 | 74.01 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 421 | 74.04 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 422 | 74.04 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 426 | 74.04 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 456 | 74.08 | radiation | 40.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 458 | 74.09 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 464 | 74.10 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 488 | 74.12 | radiation | 40.0 | 720 | > th | dose dependent | no | NA | NA |
| 635 | 74.17 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 636 | 74.18 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 664 | 74.21 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 20 |
| 668 | 74.21 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 20 |
| 669 | 74.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 676 | 74.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 20 |
| 680 | 74.24 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 699 | 74.25 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 701 | 74.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 722 | 74.29 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 731 | 74.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 754 | 74.32 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 759 | 74.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 763 | 74.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 764 | 74.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 766 | 74.34 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 768 | 74.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 769 | 74.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 792 | 74.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 796 | 74.43 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 809 | 74.45 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 816 | 74.45 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 837 | 74.46 | radiation | 40.0 | 720 | < th | dose independent | rect. | 13 | 23 |
| 858 | 74.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 864 | 74.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 869 | 74.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 872 | 74.52 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 877 | 74.54 | humidity | 70.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 884 | 74.55 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 909 | 74.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 918 | 74.60 | radiation | 30.0 | 10 | < th | dose independent | rect. | 3 | 15 |
| 946 | 74.63 | radiation | 40.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 977 | 74.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |