BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0720500 Os06g0720500|AK120098
(138 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52150.2 | chr1:19409913-19413961 REVERSE LENGTH=838 177 2e-45
AT4G32880.1 | chr4:15863587-15867822 REVERSE LENGTH=834 171 2e-43
AT2G34710.1 | chr2:14639548-14643993 REVERSE LENGTH=853 159 4e-40
AT5G60690.1 | chr5:24397734-24401933 FORWARD LENGTH=843 157 2e-39
AT1G30490.1 | chr1:10796328-10800744 REVERSE LENGTH=842 155 6e-39
AT4G04890.1 | chr4:2476970-2480090 REVERSE LENGTH=744 49 1e-06
>AT1G52150.2 | chr1:19409913-19413961 REVERSE LENGTH=838
Length = 837
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 92/107 (85%)
Query: 30 LQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSG 89
+QLYAPTTLAP DFWLLRYTS+L DGSLVVCERSL S Q GPSMPLVQ F+R EML SG
Sbjct: 256 MQLYAPTTLAPPRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSMPLVQNFVRAEMLSSG 315
Query: 90 FLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMA 136
+LIRP DGGGS+IHIVDHMDLE SVPEV+RPLYES ++AQK +MA
Sbjct: 316 YLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYESPKVLAQKTTMA 362
>AT4G32880.1 | chr4:15863587-15867822 REVERSE LENGTH=834
Length = 833
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 93/108 (86%)
Query: 30 LQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSG 89
+QLYAPTTLAPA DFW+LRYTS++ DGSLV+CERSL++ Q GPSMP F+R E+LPSG
Sbjct: 255 MQLYAPTTLAPARDFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRAEILPSG 314
Query: 90 FLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAV 137
+LIRP +GGGS++HIVDH DLEPWSVPEV+R LYESS L+AQ+ +MA
Sbjct: 315 YLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRTTMAA 362
>AT2G34710.1 | chr2:14639548-14643993 REVERSE LENGTH=853
Length = 852
Score = 159 bits (403), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 88/107 (82%)
Query: 31 QLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSGF 90
Q+YAPTTLA A DFW LRY++ L DGS VVCERSL+S GGP+ P F+R EM PSGF
Sbjct: 270 QMYAPTTLAAARDFWTLRYSTCLEDGSYVVCERSLTSATGGPTGPPSSNFVRAEMKPSGF 329
Query: 91 LIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAV 137
LIRP DGGGS++HIVDH+DL+ WSVPEV+RPLYESS ++AQK+++A
Sbjct: 330 LIRPCDGGGSILHIVDHVDLDAWSVPEVMRPLYESSKILAQKMTVAA 376
>AT5G60690.1 | chr5:24397734-24401933 FORWARD LENGTH=843
Length = 842
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 86/108 (79%)
Query: 30 LQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSG 89
+Q YAPTTLAPA DFW LRYT+ L +GS VVCERSLS GP+ F+R EML SG
Sbjct: 256 MQTYAPTTLAPARDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNAASASQFVRAEMLSSG 315
Query: 90 FLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAV 137
+LIRP DGGGS+IHIVDH++LE WSVP+V+RPLYESS +VAQK++++
Sbjct: 316 YLIRPCDGGGSIIHIVDHLNLEAWSVPDVLRPLYESSKVVAQKMTISA 363
>AT1G30490.1 | chr1:10796328-10800744 REVERSE LENGTH=842
Length = 841
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 90/111 (81%)
Query: 27 VFSLQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEML 86
+ + Q+YAPTTLA A DFW LRY++ L DGS VVCERSL+S GGP+ PL F+R +ML
Sbjct: 262 LVNTQIYAPTTLAAARDFWTLRYSTSLEDGSYVVCERSLTSATGGPNGPLSSSFVRAKML 321
Query: 87 PSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAV 137
SGFLIRP DGGGS+IHIVDH+DL+ SVPEV+RPLYESS ++AQK+++A
Sbjct: 322 SSGFLIRPCDGGGSIIHIVDHVDLDVSSVPEVLRPLYESSKILAQKMTVAA 372
>AT4G04890.1 | chr4:2476970-2480090 REVERSE LENGTH=744
Length = 743
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 27 VFSLQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEML 86
V + + P+ L P + + +RY DGS V + SL S + PS P+ +R
Sbjct: 362 VMTAEFQVPSPLVPTRENYFVRYCKQHSDGSWAVVDVSLDSLR--PSTPI----LRTRRR 415
Query: 87 PSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQK 132
PSG LI+ G S + ++HM+++ SV + +PL +S K
Sbjct: 416 PSGCLIQELPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGAK 461
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,146,089
Number of extensions: 130481
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 6
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)