Os01g0788800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0788800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.02 | 0.428 | 8.07 | -1.89 | 0.194 | -1.53 | 0.116 | -0.0687 | -0.13 | 12.5 | 20.2 | 4211 | -- | -- |
| 83.03 | 0.424 | 8.07 | -1.88 | 0.192 | -1.52 | 0.124 | -- | -0.128 | 12.5 | 20.18 | 4191 | -- | -- |
| 83.08 | 0.425 | 8.07 | -1.89 | 0.194 | -1.53 | -- | -0.0755 | -0.13 | 12.7 | 20.19 | 4210 | -- | -- |
| 83.09 | 0.425 | 8.07 | -1.88 | 0.194 | -1.52 | -- | -- | -0.128 | 12.7 | 20.18 | 4210 | -- | -- |
| 85.23 | 0.43 | 8.07 | -1.9 | -- | -1.54 | -- | -0.0153 | -0.134 | -- | 20.1 | 4043 | -- | -- |
| 124.73 | 0.524 | 8.16 | -2.81 | 0.237 | -- | 0.0943 | -- | -0.549 | 13.1 | -- | -- | -- | -- |
| 124.77 | 0.523 | 8.16 | -2.81 | 0.238 | -- | -- | -- | -0.548 | 13.2 | -- | -- | -- | -- |
| 85.22 | 0.43 | 8.07 | -1.88 | -- | -1.55 | -- | -- | -0.128 | -- | 20.15 | 4053 | -- | -- |
| 91.41 | 0.445 | 7.94 | -- | 0.206 | -2.4 | -- | -- | 0.414 | 13.3 | 19.25 | 47520 | -- | -- |
| 128.27 | 0.529 | 8.17 | -2.82 | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
| 332.96 | 0.854 | 8.09 | -- | 0.287 | -- | -- | -- | -0.235 | 13.6 | -- | -- | -- | -- |
| 93.45 | 0.45 | 7.96 | -- | -- | -2.46 | -- | -- | 0.358 | -- | 18.55 | 47520 | -- | -- |
| 337.99 | 0.858 | 8.09 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.37 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 4 | 80.73 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 6 | 80.86 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 8 | 81.22 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 9 | 81.26 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 21 | 81.91 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 22 | 81.95 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 24 | 81.99 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 26 | 82.01 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 49 | 82.32 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 51 | 82.33 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 53 | 82.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 17 |
| 55 | 82.35 | temperature | 20.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 62 | 82.38 | temperature | 20.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 85 | 82.46 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 127 | 82.67 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 132 | 82.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 134 | 82.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 147 | 82.70 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 155 | 82.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 157 | 82.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 186 | 82.84 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 196 | 82.87 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 272 | 83.04 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 305 | 83.09 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 308 | 83.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 322 | 83.12 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 328 | 83.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 334 | 83.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 346 | 83.15 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 365 | 83.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 413 | 83.24 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 440 | 83.27 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 15 | 20 |
| 443 | 83.27 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 461 | 83.29 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 465 | 83.29 | temperature | 20.0 | 14400 | < th | dose dependent | no | NA | NA |
| 506 | 83.35 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 512 | 83.37 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 545 | 83.42 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 567 | 83.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 664 | 83.67 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 671 | 83.68 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 732 | 83.79 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 794 | 83.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 839 | 84.03 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 870 | 84.11 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 885 | 84.16 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 905 | 84.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 13 |