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Os08g0187500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Roc1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0178) R2 : 0.455
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.676 (0.0444) R2dC : 0.277 R2C : 0.239
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.443 (0.0374) R2dN8 : 0.216 R2N8 : 0.178
σ : 0.336
deviance : 51.46
__
_____
C
peak time of C : 3.08
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.09 0.308 13 0.361 0.482 0.381 -0.0246 0.13 0.477 4.81 19.33 10 -- --
43.14 0.306 13 0.354 0.482 0.382 0.0294 -- 0.476 4.81 19.22 10 -- --
42.75 0.305 13 0.365 0.471 0.376 -- 0.0914 0.465 4.84 17.12 6 -- --
42.78 0.305 13 0.368 0.474 0.379 -- -- 0.466 4.89 17.18 6 -- --
53.55 0.341 13 0.377 -- 0.48 -- 0.117 0.477 -- 16.01 5 -- --
48.34 0.326 13 0.344 0.669 -- 0.105 -- 0.482 3.06 -- -- -- --
48.37 0.326 13 0.342 0.67 -- -- -- 0.481 3.07 -- -- -- --
53.62 0.341 13 0.382 -- 0.481 -- -- 0.468 -- 16.01 5 -- --
46.31 0.317 13 -- 0.487 0.367 -- -- 0.425 4.78 17.37 6 -- --
74 0.402 13 0.371 -- -- -- -- 0.498 -- -- -- -- --
51.46 0.336 13 -- 0.676 -- -- -- 0.443 3.08 -- -- -- --
57.52 0.353 13 -- -- 0.47 -- -- 0.444 -- 16.04 5 -- --
77.63 0.411 13 -- -- -- -- -- 0.457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.72 precipitation 0.1 270 < th dose independent rect. 3 16
2 35.72 precipitation 0.1 270 < th dose dependent rect. 3 16
3 35.75 precipitation 0.1 270 < th dose independent rect. 1 8
4 35.75 precipitation 0.1 270 < th dose dependent rect. 1 8
5 35.87 temperature 10.0 90 > th dose dependent rect. 3 6
6 35.89 precipitation 0.1 270 < th dose independent rect. 19 8
7 35.89 precipitation 0.1 270 < th dose dependent rect. 19 8
8 35.91 wind 9.0 270 < th dose independent rect. 7 8
9 35.93 wind 9.0 270 < th dose independent rect. 9 16
11 36.00 wind 7.0 270 < th dose independent rect. 1 8
14 36.07 temperature 10.0 270 > th dose independent rect. 1 8
16 36.07 humidity 50.0 270 > th dose independent rect. 1 8
17 36.07 atmosphere 995.0 270 > th dose independent rect. 1 8
18 36.07 atmosphere 1015.0 270 < th dose independent rect. 1 8
19 36.07 temperature 10.0 270 > th dose independent rect. 9 16
20 36.09 precipitation 0.1 270 < th dose independent rect. 2 18
21 36.09 precipitation 0.1 270 < th dose dependent rect. 2 18
22 36.10 precipitation 0.1 270 < th dose independent rect. 20 6
23 36.10 precipitation 0.1 270 < th dose dependent rect. 20 6
24 36.11 temperature 15.0 270 > th dose independent rect. 7 8
25 36.13 temperature 10.0 270 > th dose independent rect. 19 8
26 36.13 temperature 30.0 270 < th dose independent rect. 19 8
27 36.13 humidity 50.0 270 > th dose independent rect. 19 8
28 36.13 atmosphere 995.0 270 > th dose independent rect. 19 8
29 36.13 radiation 1.0 270 < th dose independent rect. 19 8
34 36.13 temperature 10.0 270 > th dose independent rect. 3 16
35 36.13 atmosphere 1015.0 270 < th dose independent rect. 3 16
36 36.13 radiation 1.0 270 < th dose dependent rect. 19 8
41 36.14 wind 9.0 270 < th dose independent rect. 19 8
43 36.15 temperature 30.0 270 < th dose independent rect. 1 8
44 36.15 radiation 40.0 270 < th dose independent rect. 15 16
45 36.17 precipitation 0.1 270 < th dose independent rect. 7 8
46 36.17 precipitation 0.1 270 < th dose dependent rect. 7 8
48 36.18 atmosphere 1015.0 270 < th dose independent rect. 7 8
49 36.18 temperature 10.0 270 > th dose independent rect. 15 16
50 36.20 wind 9.0 270 < th dose independent rect. 15 16
52 36.25 precipitation 0.1 270 < th dose independent rect. 9 16
53 36.25 precipitation 0.1 270 < th dose dependent rect. 9 16
57 36.34 wind 9.0 270 < th dose independent rect. 20 6
58 36.35 temperature 10.0 270 > th dose independent rect. 20 6
59 36.35 temperature 30.0 270 < th dose independent rect. 20 6
60 36.35 humidity 50.0 270 > th dose independent rect. 20 6
63 36.35 atmosphere 995.0 270 > th dose independent rect. 20 6
64 36.35 radiation 1.0 270 < th dose independent rect. 20 6
69 36.35 temperature 10.0 270 > th dose independent rect. 2 18
70 36.35 atmosphere 1015.0 270 < th dose independent rect. 2 18
71 36.35 radiation 1.0 270 < th dose dependent rect. 20 6
78 36.36 radiation 40.0 270 < th dose independent rect. 1 8
81 36.39 precipitation 0.1 270 < th dose independent rect. 15 16
84 36.39 precipitation 0.1 270 < th dose dependent rect. 15 16
91 36.44 temperature 10.0 270 > th dose dependent rect. 1 8
92 36.46 atmosphere 995.0 270 > th dose independent rect. 7 8
96 36.54 wind 9.0 270 < th dose independent rect. 3 16
97 36.54 wind 9.0 270 < th dose independent rect. 21 16
104 36.64 wind 9.0 270 < th dose independent rect. 2 18
172 36.76 temperature 10.0 270 > th dose independent rect. 13 8
173 36.76 temperature 10.0 270 > th dose independent rect. 21 16
174 36.76 atmosphere 995.0 270 > th dose independent rect. 21 16
179 36.79 atmosphere 995.0 90 > th dose dependent rect. 3 6
184 36.82 humidity 50.0 270 > th dose independent rect. 21 16
185 36.82 atmosphere 995.0 270 > th dose independent rect. 15 16
188 36.84 humidity 50.0 270 > th dose independent rect. 9 17
193 36.89 radiation 40.0 270 < th dose dependent rect. 2 7
194 36.90 wind 9.0 270 < th dose independent rect. 13 8
195 36.90 atmosphere 995.0 270 > th dose independent rect. 2 18
196 36.91 wind 1.0 270 > th dose independent rect. 7 8
200 36.92 atmosphere 1015.0 270 < th dose independent rect. 13 8
205 36.95 radiation 40.0 10 < th dose dependent rect. 4 18
208 36.97 radiation 20.0 10 < th dose independent rect. 4 19
222 37.02 wind 1.0 270 > th dose independent rect. 14 7
232 37.05 humidity 50.0 270 > th dose independent rect. 7 8
233 37.05 precipitation 0.1 270 < th dose independent rect. 13 8
235 37.05 precipitation 0.1 270 < th dose dependent rect. 13 8
246 37.07 atmosphere 995.0 270 > th dose independent rect. 3 16
247 37.07 precipitation 0.1 270 < th dose independent rect. 21 16
249 37.07 precipitation 0.1 270 < th dose dependent rect. 21 16
251 37.08 radiation 40.0 270 < th dose independent rect. 13 8
256 37.09 wind 9.0 90 < th dose dependent rect. 3 6
298 37.14 wind 9.0 10 < th dose dependent rect. 4 6
304 37.18 wind 1.0 270 > th dose independent rect. 20 6
305 37.18 wind 5.0 30 < th dose independent rect. 22 6
312 37.21 wind 9.0 270 < th dose independent rect. 7 19
317 37.23 humidity 50.0 270 > th dose dependent rect. 2 7
319 37.24 humidity 50.0 270 > th dose independent rect. 7 19
324 37.25 wind 9.0 270 < th dose dependent rect. 1 8
332 37.26 radiation 1.0 270 > th dose independent rect. 7 8
336 37.26 wind 9.0 270 < th dose dependent rect. 20 6
358 37.33 temperature 10.0 30 > th dose independent rect. 22 6
359 37.33 temperature 30.0 30 < th dose independent rect. 22 6
360 37.33 humidity 50.0 30 > th dose independent rect. 22 6
363 37.33 atmosphere 995.0 30 > th dose independent rect. 22 6
364 37.33 radiation 1.0 30 < th dose independent rect. 22 6
371 37.33 temperature 10.0 30 > th dose independent rect. 4 18
373 37.33 atmosphere 1015.0 30 < th dose independent rect. 4 18
375 37.33 radiation 1.0 30 < th dose dependent rect. 22 6
383 37.34 temperature 30.0 270 < th dose independent rect. 2 5
393 37.34 temperature 10.0 270 > th dose independent rect. 7 19
395 37.35 precipitation 0.1 270 < th dose independent rect. 7 19
396 37.35 precipitation 0.1 270 < th dose dependent rect. 7 19
431 37.39 precipitation 0.1 10 < th dose independent rect. 4 18
433 37.39 precipitation 0.1 10 < th dose dependent rect. 4 18
437 37.40 humidity 50.0 270 > th dose dependent rect. 2 5
450 37.45 wind 5.0 10 < th dose independent rect. 4 6
455 37.46 wind 9.0 10 < th dose dependent rect. 22 6
459 37.47 humidity 50.0 270 > th dose dependent rect. 20 6
461 37.48 radiation 40.0 270 < th dose independent rect. 2 17
464 37.49 radiation 40.0 90 < th dose independent rect. 4 18
466 37.51 precipitation 0.1 30 < th dose independent rect. 22 6
468 37.51 precipitation 0.1 30 < th dose dependent rect. 22 6
472 37.52 radiation 40.0 90 < th dose independent rect. 3 20
473 37.52 wind 9.0 270 < th dose dependent rect. 21 4
497 37.55 atmosphere 995.0 30 > th dose independent rect. 4 18
500 37.56 wind 9.0 30 < th dose independent rect. 4 18
517 37.60 wind 1.0 270 > th dose independent rect. 9 16
519 37.61 atmosphere 1005.0 30 > th dose independent rect. 4 5
522 37.62 atmosphere 995.0 270 > th dose independent rect. 13 8
559 37.74 wind 1.0 270 > th dose independent rect. 22 3
562 37.75 humidity 50.0 270 > th dose dependent rect. 21 4
570 37.77 radiation 20.0 10 < th dose independent rect. 4 5
575 37.78 wind 9.0 90 < th dose independent rect. 9 8
739 37.95 wind 9.0 10 < th dose independent rect. 10 18
758 38.00 radiation 40.0 10 < th dose independent rect. 4 6
780 38.03 radiation 40.0 270 < th dose independent rect. 1 20
811 38.07 temperature 10.0 90 > th dose independent rect. 9 8
812 38.07 atmosphere 1015.0 90 < th dose independent rect. 9 8
814 38.07 atmosphere 995.0 270 > th dose independent rect. 9 16
833 38.10 precipitation 0.1 10 < th dose independent rect. 4 6
840 38.10 precipitation 0.1 10 < th dose dependent rect. 4 6
873 38.15 temperature 10.0 10 > th dose independent rect. 4 6
876 38.15 atmosphere 995.0 10 > th dose independent rect. 4 6
877 38.15 atmosphere 1015.0 10 < th dose independent rect. 4 6
881 38.15 temperature 10.0 10 > th dose independent rect. 10 18
886 38.16 atmosphere 1015.0 270 < th dose independent rect. 20 6
900 38.17 temperature 10.0 270 > th dose dependent rect. 7 7
907 38.19 atmosphere 1015.0 270 < th dose independent rect. 22 3
910 38.19 humidity 50.0 10 > th dose dependent rect. 22 6
938 38.21 precipitation 0.1 90 < th dose independent rect. 9 8
941 38.21 precipitation 0.1 90 < th dose dependent rect. 9 8