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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0575600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-related containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0307) R2 : 0.772
β1 : -2.74 (0.113) R2dD : 0.307 R2D : 0.29
β2 : 2.29 (0.0739) R2dC : 0.482 R2C : 0.464
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0113 (0.0656) R2dN8 : 2e-05 R2N8 : 0.000729
σ : 0.578
deviance : 152.43
__
_____
C
peak time of C : 1.58
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.23 0.532 5.54 -2.75 1.77 0.992 -1.31 -0.748 0.0236 1.13 50 72 -- --
128.89 0.529 5.54 -2.79 1.76 0.95 -1.63 -- 0.0223 1.16 50.76 59 -- --
132.49 0.54 5.54 -2.7 1.78 1.04 -- -2.06 0.0343 1.36 44.75 61 -- --
140.17 0.551 5.54 -2.74 1.8 0.875 -- -- 0.0312 1.19 51.67 61 -- --
218.31 0.692 5.49 -2.66 -- 2.15 -- -1.66 0.19 -- 63.84 9 -- --
143.71 0.562 5.54 -2.79 2.29 -- -1.48 -- 0.00322 1.56 -- -- -- --
152.43 0.578 5.54 -2.74 2.29 -- -- -- 0.0113 1.58 -- -- -- --
226.38 0.701 5.49 -2.72 -- 2.12 -- -- 0.166 -- 63.56 5 -- --
335.58 0.853 5.47 -- 1.74 1.04 -- -- 0.333 1.05 40.07 75 -- --
473.98 1.02 5.51 -2.65 -- -- -- -- 0.0615 -- -- -- -- --
350.01 0.875 5.47 -- 2.24 -- -- -- 0.316 1.54 -- -- -- --
421.83 0.957 5.41 -- -- 2.09 -- -- 0.462 -- 62.92 5 -- --
658.64 1.2 5.44 -- -- -- -- -- 0.355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.55 humidity 50 10 > th dose dependent rect. 3 23
5 127.56 humidity 90 90 < th dose dependent rect. 19 23
7 127.71 humidity 50 10 > th dose dependent rect. 5 15
9 127.83 humidity 60 90 > th dose dependent rect. 3 20
11 127.93 humidity 50 10 > th dose dependent rect. 5 18
18 128.26 humidity 50 90 > th dose dependent rect. 15 23
21 128.37 humidity 50 90 > th dose dependent rect. 10 23
22 128.44 humidity 60 270 > th dose dependent rect. 1 21
26 128.57 humidity 50 90 > th dose dependent rect. 17 23
27 128.58 humidity 50 90 > th dose dependent no NA NA
29 128.59 humidity 90 30 < th dose dependent rect. 7 11
30 128.59 humidity 90 30 < th dose dependent rect. 23 19
36 128.68 humidity 50 10 > th dose dependent rect. 15 23
41 128.74 humidity 90 30 < th dose dependent rect. 4 14
56 128.98 humidity 50 10 > th dose dependent rect. 11 23
83 129.34 humidity 50 90 > th dose dependent rect. 13 23
86 129.37 humidity 50 10 > th dose dependent rect. 18 23
108 129.57 radiation 30 90 < th dose dependent rect. 10 23
110 129.59 humidity 60 270 > th dose dependent rect. 2 18
113 129.60 humidity 50 10 > th dose dependent rect. 3 21
133 129.73 humidity 50 720 > th dose dependent rect. 11 2
135 129.73 humidity 90 10 < th dose dependent rect. 7 23
149 129.84 humidity 90 10 < th dose dependent rect. 23 23
157 129.88 radiation 20 1440 < th dose dependent rect. 11 1
163 129.91 humidity 50 90 > th dose dependent sin 0 NA
165 129.92 humidity 50 10 > th dose dependent sin 22 NA
197 130.02 humidity 90 10 < th dose dependent rect. 7 18
199 130.02 radiation 30 90 < th dose dependent rect. 3 23
216 130.07 humidity 50 90 > th dose dependent rect. 21 23
231 130.17 humidity 90 10 < th dose dependent rect. 7 15
244 130.22 humidity 90 10 < th dose dependent rect. 4 22
249 130.25 wind 7 720 > th dose independent rect. 22 11
259 130.28 humidity 50 10 > th dose dependent rect. 1 23
260 130.28 humidity 90 10 < th dose dependent rect. 2 23
265 130.30 humidity 90 10 < th dose dependent no NA NA
275 130.34 humidity 90 90 < th dose dependent rect. 3 23
315 130.43 humidity 90 10 < th dose dependent rect. 4 18
336 130.49 humidity 90 10 < th dose dependent rect. 2 20
362 130.56 humidity 90 270 > th dose independent rect. 1 21
363 130.56 humidity 90 90 < th dose dependent sin 0 NA
364 130.56 humidity 50 90 > th dose dependent rect. 3 11
425 130.67 humidity 90 10 < th dose dependent sin 22 NA
453 130.73 humidity 50 10 > th dose dependent rect. 5 9
465 130.75 radiation 10 1440 < th dose independent rect. 13 1
491 130.80 humidity 90 10 < th dose dependent rect. 9 23
492 130.81 humidity 50 10 > th dose dependent rect. 11 12
506 130.85 humidity 50 10 > th dose dependent rect. 5 12
526 130.88 humidity 50 10 > th dose dependent rect. 5 23
529 130.88 radiation 30 90 < th dose dependent rect. 17 23
543 130.93 humidity 50 270 > th dose dependent rect. 10 10
550 130.94 humidity 50 10 > th dose dependent rect. 18 20
600 131.05 radiation 10 1440 > th dose independent rect. 10 2
601 131.05 radiation 40 90 < th dose dependent rect. 10 13
611 131.07 radiation 10 1440 < th dose independent rect. 10 7
624 131.09 humidity 50 90 > th dose dependent rect. 11 12
654 131.12 humidity 90 10 < th dose dependent rect. 17 23
666 131.14 humidity 50 720 > th dose dependent rect. 9 6
764 131.27 wind 7 720 > th dose dependent rect. 22 11
795 131.31 humidity 90 30 > th dose independent rect. 5 17
827 131.35 radiation 40 90 < th dose independent rect. 11 12
891 131.42 radiation 10 90 < th dose independent rect. 10 23
924 131.45 humidity 90 10 < th dose dependent rect. 13 23
930 131.47 wind 3 1440 > th dose independent rect. 24 3
940 131.48 radiation 10 1440 < th dose independent rect. 10 14
949 131.49 radiation 10 1440 < th dose independent rect. 10 11
964 131.50 radiation 10 90 < th dose independent rect. 3 23
965 131.50 radiation 30 90 < th dose dependent no NA NA
986 131.52 radiation 30 90 < th dose dependent rect. 15 23