Os08g0136100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Roc1.
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Os08g0136100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Roc1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.12 | 0.444 | 3.27 | 0.757 | 0.274 | -0.675 | 0.43 | 1.22 | 0.246 | 11.5 | 14.8 | 254 | -- | -- |
| 90.16 | 0.442 | 3.29 | 0.573 | 0.266 | -0.635 | 0.502 | -- | 0.19 | 11.8 | 15.15 | 279 | -- | -- |
| 89.7 | 0.444 | 3.26 | 0.813 | 0.361 | -0.644 | -- | 1.74 | 0.259 | 11 | 14.9 | 222 | -- | -- |
| 91.34 | 0.445 | 3.29 | 0.587 | 0.26 | -0.661 | -- | -- | 0.194 | 11.9 | 14.3 | 281 | -- | -- |
| 92.59 | 0.448 | 3.28 | 0.733 | -- | -0.711 | -- | 0.635 | 0.241 | -- | -0.6599 | 689 | -- | -- |
| 95.07 | 0.457 | 3.31 | 0.427 | 0.273 | -- | 0.566 | -- | 0.104 | 9.46 | -- | -- | -- | -- |
| 96.23 | 0.459 | 3.31 | 0.447 | 0.273 | -- | -- | -- | 0.104 | 9.21 | -- | -- | -- | -- |
| 92.88 | 0.449 | 3.29 | 0.622 | -- | -0.7 | -- | -- | 0.212 | -- | 13.28 | 720 | -- | -- |
| 99.65 | 0.465 | 3.31 | -- | 0.244 | -0.402 | -- | -- | 0.104 | 10.7 | -0.7676 | 282 | -- | -- |
| 100.55 | 0.469 | 3.32 | 0.446 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 101.5 | 0.471 | 3.32 | -- | 0.273 | -- | -- | -- | 0.0542 | 9.09 | -- | -- | -- | -- |
| 102.06 | 0.471 | 3.32 | -- | -- | -0.467 | -- | -- | 0.113 | -- | -0.77 | 669 | -- | -- |
| 105.8 | 0.48 | 3.33 | -- | -- | -- | -- | -- | 0.0558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.53 | wind | 5 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 3 | 85.71 | wind | 5 | 30 | > th | dose independent | rect. | 24 | 8 |
| 4 | 85.73 | wind | 5 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 5 | 85.93 | wind | 5 | 90 | > th | dose independent | rect. | 3 | 5 |
| 7 | 86.02 | wind | 5 | 90 | > th | dose independent | rect. | 5 | 3 |
| 11 | 86.07 | wind | 5 | 90 | > th | dose independent | rect. | 7 | 1 |
| 19 | 86.16 | wind | 5 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 34 | 86.39 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 38 | 86.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 46 | 86.52 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 62 | 86.52 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 77 | 86.54 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 1 |
| 81 | 86.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 84 | 86.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 88 | 86.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 90 | 86.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 91 | 86.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 94 | 86.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 95 | 86.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 98 | 86.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 115 | 86.81 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 122 | 86.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 162 | 86.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 203 | 87.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 17 |
| 207 | 87.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 238 | 87.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 265 | 87.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 295 | 87.18 | humidity | 90 | 43200 | > th | dose independent | sin | 1 | NA |
| 305 | 87.20 | humidity | 90 | 43200 | > th | dose dependent | sin | 0 | NA |
| 308 | 87.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 309 | 87.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 326 | 87.23 | radiation | 1 | 43200 | > th | dose independent | sin | 10 | NA |
| 390 | 87.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 393 | 87.27 | radiation | 1 | 43200 | < th | dose independent | sin | 10 | NA |
| 425 | 87.31 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 462 | 87.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 538 | 87.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 542 | 87.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 552 | 87.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 569 | 87.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 572 | 87.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 573 | 87.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 822 | 87.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 846 | 87.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 867 | 87.58 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |