Os06g0208100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homeodomain protein HOX3.
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Os06g0208100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homeodomain protein HOX3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 421.83 | 0.965 | 3.97 | 2.11 | 0.845 | -0.739 | -0.404 | 10.6 | -0.208 | 11.9 | 26.52 | 4631 | -- | -- |
| 444.48 | 0.982 | 4.34 | -0.786 | 0.831 | 0.588 | -0.299 | -- | -0.95 | 11.7 | 26.36 | 47520 | -- | -- |
| 422.52 | 0.957 | 3.98 | 2.09 | 0.847 | -0.73 | -- | 10.5 | -0.21 | 11.9 | 26.5 | 4637 | -- | -- |
| 443.65 | 0.981 | 4.33 | -0.737 | 0.851 | 0.532 | -- | -- | -0.91 | 11.6 | 31.35 | 47520 | -- | -- |
| 467.17 | 1.01 | 3.99 | 2.04 | -- | -0.632 | -- | 9.83 | -0.149 | -- | 25.49 | 4588 | -- | -- |
| 451.8 | 0.996 | 4.28 | -0.215 | 0.808 | -- | -0.399 | -- | -0.652 | 11.7 | -- | -- | -- | -- |
| 452.48 | 0.996 | 4.28 | -0.232 | 0.81 | -- | -- | -- | -0.654 | 11.7 | -- | -- | -- | -- |
| 483.46 | 1.03 | 4.3 | -0.342 | -- | 0.667 | -- | -- | -0.696 | -- | 25.49 | 4588 | -- | -- |
| 452.07 | 0.99 | 4.28 | -- | 0.82 | 0.19 | -- | -- | -0.687 | 11.7 | 31 | 47520 | -- | -- |
| 493.77 | 1.04 | 4.3 | -0.255 | -- | -- | -- | -- | -0.664 | -- | -- | -- | -- | -- |
| 453.9 | 0.997 | 4.27 | -- | 0.813 | -- | -- | -- | -0.628 | 11.7 | -- | -- | -- | -- |
| 486.48 | 1.03 | 4.29 | -- | -- | 0.617 | -- | -- | -0.657 | -- | 25.49 | 4588 | -- | -- |
| 495.49 | 1.04 | 4.29 | -- | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 417.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 418.04 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 3 | 418.22 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 4 | 418.31 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 5 | 418.39 | radiation | 40.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 8 | 418.84 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 15 | 419.14 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 19 | 419.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 22 | 419.30 | humidity | 70.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 25 | 419.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 33 | 419.48 | radiation | 40.0 | 720 | < th | dose independent | rect. | 2 | 22 |
| 39 | 419.65 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 46 | 419.79 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 47 | 419.80 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 54 | 419.85 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 64 | 420.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 69 | 420.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 70 | 420.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 77 | 420.18 | radiation | 40.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 78 | 420.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 79 | 420.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 92 | 420.33 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 100 | 420.37 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 107 | 420.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 125 | 420.54 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 180 | 420.80 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 198 | 420.86 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 206 | 420.91 | radiation | 40.0 | 720 | < th | dose independent | rect. | 8 | 16 |
| 208 | 420.91 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 224 | 420.98 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 225 | 420.98 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 251 | 421.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 259 | 421.06 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 309 | 421.17 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 327 | 421.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 339 | 421.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 361 | 421.24 | wind | 5.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 362 | 421.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 365 | 421.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 383 | 421.27 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 401 | 421.31 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 419 | 421.34 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 422 | 421.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 447 | 421.37 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 469 | 421.39 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 493 | 421.42 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 495 | 421.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 518 | 421.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 551 | 421.50 | radiation | 40.0 | 720 | < th | dose independent | rect. | 22 | 16 |
| 552 | 421.50 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 562 | 421.51 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 570 | 421.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 573 | 421.53 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 587 | 421.54 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 590 | 421.54 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 651 | 421.61 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 662 | 421.62 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 691 | 421.65 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 760 | 421.72 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 859 | 421.83 | radiation | 40.0 | 720 | < th | dose independent | rect. | 12 | 8 |
| 862 | 421.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 889 | 421.86 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 915 | 421.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 957 | 421.92 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 966 | 421.92 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |