Os08g0292000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeobox domain containing protein.
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Os08g0292000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeobox domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.82 | 0.42 | 9.99 | -1.39 | 0.977 | 0.57 | -0.0166 | 3.2 | 0.339 | 22.8 | 30.1 | 228 | -- | -- |
| 80.56 | 0.418 | 9.96 | -1.13 | 0.982 | 0.946 | -0.0357 | -- | 0.333 | 22.9 | 30.38 | 223 | -- | -- |
| 79.82 | 0.416 | 9.99 | -1.39 | 0.977 | 0.57 | -- | 3.2 | 0.339 | 22.8 | 30.09 | 228 | -- | -- |
| 80.55 | 0.418 | 9.96 | -1.13 | 0.981 | 0.952 | -- | -- | 0.336 | 22.9 | 30.36 | 226 | -- | -- |
| 135.36 | 0.542 | 9.91 | -1.32 | -- | 0.569 | -- | 1.77 | 0.454 | -- | 28.71 | 132 | -- | -- |
| 101.09 | 0.471 | 9.94 | -1.25 | 0.989 | -- | 0.0759 | -- | 0.409 | 24 | -- | -- | -- | -- |
| 101.11 | 0.471 | 9.94 | -1.25 | 0.988 | -- | -- | -- | 0.408 | 24 | -- | -- | -- | -- |
| 136.25 | 0.546 | 9.91 | -1.09 | -- | 0.596 | -- | -- | 0.453 | -- | 28.59 | 106 | -- | -- |
| 112.74 | 0.495 | 9.94 | -- | 0.977 | 1.1 | -- | -- | 0.475 | 22.4 | 29.9 | 228 | -- | -- |
| 162.61 | 0.596 | 9.92 | -1.22 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 142.23 | 0.558 | 9.91 | -- | 0.972 | -- | -- | -- | 0.547 | 23.9 | -- | -- | -- | -- |
| 164.97 | 0.6 | 9.89 | -- | -- | 0.691 | -- | -- | 0.571 | -- | 28.4 | 48 | -- | -- |
| 201.79 | 0.663 | 9.89 | -- | -- | -- | -- | -- | 0.557 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.37 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 11 |
| 2 | 76.39 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 15 | 78.62 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 10 |
| 17 | 78.78 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 20 | 78.78 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 21 | 78.95 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 24 | 79.06 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 39 | 79.12 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 43 | 79.18 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 77 | 80.11 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 95 | 80.15 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 99 | 80.23 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 191 | 80.24 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 13 |
| 217 | 80.46 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 226 | 80.63 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 233 | 80.89 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 248 | 81.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 285 | 81.71 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 295 | 81.82 | temperature | 30 | 270 | > th | dose dependent | sin | 3 | NA |
| 306 | 82.03 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 312 | 82.24 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 351 | 82.68 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 368 | 82.74 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 375 | 82.79 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 512 | 83.53 | temperature | 30 | 270 | > th | dose dependent | no | NA | NA |
| 758 | 84.26 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 21 |
| 771 | 84.42 | temperature | 30 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 951 | 84.72 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 1 |
| 956 | 84.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 959 | 84.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 21 |