BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0606600 Os07g0606600|AK112118
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0606600 Similar to Nuclear factor Y transcription fact... 281 3e-76
Os03g0413000 Similar to Potential histone-like transcriptio... 227 5e-60
Os08g0174500 Similar to HAP3 186 2e-47
Os01g0834400 Similar to HAP3 176 1e-44
Os05g0573500 HAP3 164 5e-41
Os01g0935200 Histone-like transcription factor/archaeal his... 162 2e-40
Os02g0725700 Histone-like transcription factor/archaeal his... 161 3e-40
Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein 145 2e-35
Os01g0935100 127 6e-30
Os02g0725900 Histone-like transcription factor/archaeal his... 90 1e-18
Os08g0383700 Repressor protein 69 2e-12
>Os07g0606600 Similar to Nuclear factor Y transcription factor subunit B homolog
Length = 224
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 148/224 (66%)
Query: 1 MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60
MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE
Sbjct: 1 MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60
Query: 61 FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIXX 120
FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAI
Sbjct: 61 FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIGA 120
Query: 121 XXXXXXXXXXXXXXXXXXXXHHHQDASRNNXXXXXXXXXXXXXXXXXXXXXXSPPASSAG 180
HHHQDASRNN SPPASSAG
Sbjct: 121 AGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQPMYGSPPASSAG 180
Query: 181 YAQXXXXXXXXXQMVMXXXXXXXXXXXXXXXXXXXXXXXRQDRL 224
YAQ QMVM RQDRL
Sbjct: 181 YAQPPPPHHHHHQMVMGGKGAYGHGGGGGGGPSPSSGYGRQDRL 224
>Os03g0413000 Similar to Potential histone-like transcription factor
Length = 219
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/119 (89%), Positives = 113/119 (94%), Gaps = 2/119 (1%)
Query: 1 MPDSDNESGGPSN--AGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECV 58
MPDSDN+SGGPSN GE +S REQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECV
Sbjct: 1 MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
Query: 59 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA 117
SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDY+DPLK YLHKFRE+EGE+A
Sbjct: 61 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERA 119
>Os08g0174500 Similar to HAP3
Length = 297
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 94/98 (95%)
Query: 20 AREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRK 79
A+EQDRFLPIANVSRIMKR+LPANAKISK++KETVQECVSEFISF+TGEASDKCQREKRK
Sbjct: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
Query: 80 TINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA 117
TINGDDLLWAMTTLGFE Y+ PLK YL+++RE EGEKA
Sbjct: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
>Os01g0834400 Similar to HAP3
Length = 118
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 96/107 (89%), Gaps = 3/107 (2%)
Query: 6 NESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFI 65
+ESG P +G REQDRFLPIAN+SRIMK+A+PAN KI+KDAKET+QECVSEFISF+
Sbjct: 15 DESGSPPRSG---GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFV 71
Query: 66 TGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFREL 112
T EASDKCQ+EKRKTING+DLL+AM TLGFE+Y+DPLK+YLHK+RE+
Sbjct: 72 TSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
>Os05g0573500 HAP3
Length = 143
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 21 REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80
+EQDRFLPIAN+ RIM+RA+P N KI+KD+KE+VQECVSEFISFIT EASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 81 INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGE 115
INGDDL+W+M TLGFEDY++PLKLYL +RE EG+
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
>Os01g0935200 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 177
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 86/96 (89%)
Query: 21 REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80
+EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
Query: 81 INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116
+NGDD+ WA LGF+DY+DP++ YL+K+RELEG++
Sbjct: 93 VNGDDVCWAFGALGFDDYVDPMRRYLNKYRELEGDR 128
>Os02g0725700 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 254
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 86/95 (90%)
Query: 21 REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80
REQDR +PIANV RIM+R LPA+AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 31 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 90
Query: 81 INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGE 115
I +D+LWAM+ LGF+DY++PL +YLH++RE EGE
Sbjct: 91 ITAEDVLWAMSRLGFDDYVEPLGVYLHRYREFEGE 125
>Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein
Length = 250
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 76/96 (79%)
Query: 18 ASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 77
A REQDR +PIANV RIM+R LP +AKIS DAKE +QECVSEFISF+TGEA+D+C RE
Sbjct: 27 AVVREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREH 86
Query: 78 RKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELE 113
RKT+ +DL+WAM LGF+DY+ PL YL + RE E
Sbjct: 87 RKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 122
>Os01g0935100
Length = 144
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 71/91 (78%)
Query: 23 QDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTIN 82
QD LPIANV RIMK LP AKISK AKET+QEC +EFISF+TGEAS++C+RE+RKT+N
Sbjct: 5 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVN 64
Query: 83 GDDLLWAMTTLGFEDYIDPLKLYLHKFRELE 113
GDD+ AM +LG + Y D + YL ++RE E
Sbjct: 65 GDDVCHAMRSLGLDHYADAMHRYLQRYREGE 95
>Os02g0725900 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 186
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%)
Query: 27 LPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 86
LP+AN+ R++K+ LP AKI AK +C EF+ F+ EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 87 LWAMTTLGFEDYIDPLKLYLHKFRELE 113
L + LGF+ Y+DP+ Y+H +RE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
>Os08g0383700 Repressor protein
Length = 296
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 23 QDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTIN 82
+D LP + + +I+K LP + ++++DA++ + EC EFI+ ++ E+++ C RE +KTI
Sbjct: 12 EDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIA 71
Query: 83 GDDLLWAMTTLGFEDYIDPLKLYL--HKFRELEGEKA 117
+ +L A+ LGF +YI+ ++ HK L+ KA
Sbjct: 72 PEHVLRALQDLGFREYIEEVQAAYEHHKHDTLDSPKA 108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,893,037
Number of extensions: 147643
Number of successful extensions: 241
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 11
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)