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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0725900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone-like transcription factor/archaeal histone/DNA topoisomerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0252) R2 : 0.0286
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0531) R2dN8 : 0.0369 R2N8 : 0.0286
σ : 0.475
deviance : 103.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.62 0.467 2.94 -0.2 0.122 -0.373 -0.00627 1.53 0.17 12.1 1.101 16 -- --
100.95 0.468 2.93 -0.141 0.0991 -0.279 0.0373 -- 0.191 11.9 1.199 16 -- --
98.62 0.463 2.94 -0.2 0.122 -0.372 -- 1.53 0.17 12.1 1.105 16 -- --
100.93 0.468 2.93 -0.117 0.116 -0.257 -- -- 0.191 11.5 1.17 16 -- --
99.53 0.465 2.95 -0.199 -- -0.327 -- 1.55 0.167 -- 1.135 15 -- --
102.56 0.475 2.93 -0.0968 0.125 -- 0.101 -- 0.183 8.95 -- -- -- --
102.59 0.474 2.93 -0.0934 0.124 -- -- -- 0.183 8.91 -- -- -- --
101.82 0.47 2.93 -0.127 -- -0.234 -- -- 0.186 -- 1.144 16 -- --
101.35 0.469 2.92 -- 0.12 -0.241 -- -- 0.202 11.4 1.119 16 -- --
103.48 0.475 2.93 -0.0935 -- -- -- -- 0.184 -- -- -- -- --
102.82 0.474 2.92 -- 0.124 -- -- -- 0.194 8.97 -- -- -- --
102.24 0.471 2.93 -- -- -0.218 -- -- 0.2 -- 1.156 16 -- --
103.71 0.475 2.93 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.54 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 90.72 temperature 20.0 30 > th dose dependent rect. 2 1
3 90.78 wind 3.0 30 < th dose dependent rect. 2 1
5 90.82 temperature 20.0 30 > th dose independent rect. 2 1
7 90.83 wind 1.0 30 < th dose independent rect. 2 1
8 90.85 temperature 25.0 30 < th dose independent rect. 2 1
11 90.89 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 91.03 humidity 80.0 30 > th dose independent rect. 2 1
21 91.05 temperature 10.0 30 > th dose independent rect. 2 1
24 91.05 humidity 50.0 30 > th dose independent rect. 2 1
28 91.05 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 91.05 radiation 1.0 30 < th dose independent rect. 2 1
35 91.05 precipitation 0.1 30 < th dose independent rect. 2 1
36 91.05 temperature 10.0 30 > th dose independent rect. 3 23
37 91.05 radiation 1.0 30 < th dose dependent rect. 2 1
42 91.05 precipitation 0.1 30 < th dose dependent rect. 2 1
43 91.07 humidity 50.0 30 > th dose dependent rect. 2 1
48 91.49 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 91.69 temperature 30.0 30 < th dose dependent rect. 2 1
55 92.35 wind 9.0 30 < th dose independent rect. 3 23
57 92.41 wind 1.0 30 > th dose independent rect. 2 1
60 92.59 wind 9.0 1440 < th dose independent rect. 3 1
61 92.59 temperature 10.0 1440 > th dose independent rect. 3 1
64 92.59 temperature 30.0 1440 < th dose independent rect. 3 1
68 92.59 humidity 50.0 1440 > th dose independent rect. 3 1
77 92.59 atmosphere 995.0 1440 > th dose independent rect. 3 1
78 92.59 radiation 1.0 1440 < th dose independent rect. 3 1
98 92.59 temperature 10.0 1440 > th dose independent rect. 4 23
101 92.59 radiation 1.0 1440 < th dose dependent rect. 3 1
161 93.59 atmosphere 995.0 30 > th dose independent rect. 3 23
168 94.32 precipitation 0.1 30 < th dose independent rect. 3 23
169 94.32 precipitation 0.1 30 < th dose dependent rect. 3 23
182 95.87 temperature 30.0 10 < th dose independent rect. 3 23
200 97.41 humidity 50.0 30 > th dose independent rect. 3 23
203 97.57 wind 1.0 10 > th dose independent rect. 13 23
216 98.26 humidity 50.0 720 > th dose independent rect. 3 8
221 98.46 wind 1.0 30 > th dose independent rect. 3 23
241 98.55 wind 1.0 10 < th dose independent rect. 9 18
254 98.59 radiation 40.0 10 < th dose independent rect. 3 23
264 98.72 wind 1.0 10 < th dose independent rect. 2 10
269 98.78 wind 1.0 10 < th dose independent rect. 2 8
281 98.98 wind 1.0 10 > th dose independent sin 4 NA
289 99.07 temperature 10.0 1440 > th dose independent rect. 13 1
293 99.07 atmosphere 995.0 1440 > th dose independent rect. 13 1
296 99.07 temperature 10.0 1440 > th dose independent rect. 14 23
302 99.12 atmosphere 1015.0 30 < th dose independent rect. 3 23
303 99.14 humidity 60.0 270 < th dose independent rect. 8 1
329 99.14 humidity 60.0 270 < th dose dependent rect. 8 1
355 99.14 radiation 40.0 10 > th dose dependent rect. 12 23
392 99.27 radiation 40.0 10 > th dose independent rect. 12 23
393 99.28 radiation 40.0 30 > th dose independent rect. 12 1
394 99.30 radiation 40.0 30 > th dose dependent rect. 12 1
395 99.31 temperature 30.0 10 > th dose independent rect. 12 1
421 99.37 humidity 50.0 30 > th dose independent rect. 12 1
443 99.42 wind 1.0 10 > th dose independent rect. 24 12
445 99.43 temperature 25.0 30 > th dose dependent rect. 12 1
447 99.44 humidity 90.0 90 < th dose independent rect. 2 1
448 99.44 atmosphere 1010.0 30 < th dose independent rect. 12 1
450 99.46 wind 1.0 10 > th dose independent no NA NA
474 99.51 temperature 25.0 270 > th dose independent rect. 23 4
493 99.53 radiation 40.0 30 < th dose dependent rect. 3 23
496 99.55 temperature 10.0 720 > th dose independent rect. 15 8
497 99.55 temperature 10.0 720 > th dose independent rect. 23 16
499 99.55 humidity 50.0 30 > th dose dependent rect. 12 1
500 99.56 temperature 30.0 10 > th dose independent rect. 10 1
512 99.58 atmosphere 995.0 720 > th dose independent rect. 15 8
514 99.59 wind 3.0 30 > th dose independent rect. 12 1
516 99.59 temperature 10.0 720 > th dose independent rect. 3 8
517 99.59 atmosphere 995.0 720 > th dose independent rect. 3 8
518 99.59 temperature 10.0 720 > th dose independent rect. 11 16
519 99.59 atmosphere 995.0 720 > th dose independent rect. 23 16
520 99.59 radiation 10.0 30 < th dose dependent rect. 3 23
531 99.63 humidity 80.0 30 < th dose independent rect. 12 1
539 99.66 atmosphere 995.0 720 > th dose independent rect. 11 16
542 99.68 wind 9.0 720 < th dose independent rect. 3 8
543 99.68 atmosphere 1015.0 30 < th dose dependent rect. 12 1
544 99.69 temperature 20.0 30 > th dose independent rect. 12 1
546 99.69 humidity 60.0 1440 > th dose independent rect. 4 5
553 99.69 temperature 25.0 270 > th dose dependent rect. 23 4
586 99.72 wind 7.0 30 < th dose independent rect. 12 1
588 99.72 wind 1.0 10 > th dose independent rect. 17 23
602 99.73 wind 1.0 10 > th dose independent rect. 23 23
603 99.73 wind 9.0 30 < th dose independent rect. 13 23
627 99.76 wind 1.0 30 > th dose dependent rect. 12 1
636 99.79 temperature 10.0 30 > th dose independent rect. 12 1
638 99.79 atmosphere 995.0 30 > th dose independent rect. 12 1
641 99.79 precipitation 0.1 30 < th dose independent rect. 12 1
645 99.79 temperature 10.0 30 > th dose independent rect. 13 23
646 99.79 precipitation 0.1 30 < th dose dependent rect. 12 1
651 99.81 humidity 60.0 1440 > th dose independent rect. 6 3
672 99.89 atmosphere 995.0 30 > th dose dependent rect. 12 15
676 99.90 wind 9.0 30 < th dose dependent rect. 12 1
677 99.90 atmosphere 995.0 30 > th dose dependent rect. 12 1
681 99.92 temperature 15.0 90 > th dose independent rect. 13 12
683 99.93 wind 1.0 10 > th dose independent sin 13 NA
685 99.93 wind 3.0 10 < th dose dependent rect. 2 9
688 99.94 wind 1.0 10 < th dose independent rect. 2 6
701 99.96 radiation 1.0 30 < th dose independent rect. 3 23
743 99.99 wind 1.0 720 > th dose independent rect. 15 8
744 99.99 humidity 50.0 720 > th dose independent rect. 5 8
753 100.00 humidity 90.0 10 > th dose independent rect. 24 3
755 100.00 temperature 25.0 270 > th dose dependent rect. 23 1
788 100.02 humidity 50.0 30 > th dose independent rect. 2 12
800 100.03 wind 9.0 10 > th dose dependent rect. 13 3
816 100.04 humidity 60.0 1440 > th dose independent rect. 24 9
817 100.04 humidity 60.0 1440 > th dose independent rect. 22 11
829 100.06 temperature 30.0 30 < th dose independent rect. 12 1
836 100.07 temperature 15.0 10 > th dose independent rect. 14 12
903 100.10 radiation 40.0 10 < th dose independent rect. 3 12
929 100.15 precipitation 0.1 720 < th dose independent rect. 15 8
934 100.15 precipitation 0.1 720 < th dose dependent rect. 15 8
941 100.16 wind 3.0 10 < th dose dependent rect. 9 18
989 100.23 wind 1.0 10 < th dose independent sin 3 NA
993 100.23 wind 9.0 720 < th dose independent rect. 23 16
994 100.23 wind 1.0 10 > th dose independent rect. 21 23