BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0725900 Os02g0725900|AJ300218
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47670.1 | chr5:19315061-19315975 FORWARD LENGTH=235 82 2e-16
AT1G09030.1 | chr1:2908611-2909030 REVERSE LENGTH=140 81 3e-16
AT1G21970.1 | chr1:7727750-7729571 REVERSE LENGTH=239 81 3e-16
AT4G14540.1 | chr4:8344663-8345148 FORWARD LENGTH=162 79 1e-15
AT3G53340.1 | chr3:19774667-19775991 REVERSE LENGTH=177 78 3e-15
AT5G47640.1 | chr5:19309414-19309986 FORWARD LENGTH=191 77 5e-15
AT2G37060.1 | chr2:15576336-15577660 FORWARD LENGTH=174 76 1e-14
AT2G38880.8 | chr2:16238685-16240316 FORWARD LENGTH=165 73 7e-14
AT2G13570.1 | chr2:5655842-5656489 REVERSE LENGTH=216 71 3e-13
AT2G47810.1 | chr2:19582938-19583420 REVERSE LENGTH=161 70 5e-13
AT5G08190.1 | chr5:2636204-2637125 FORWARD LENGTH=164 67 6e-12
AT5G23090.2 | chr5:7749391-7750203 FORWARD LENGTH=160 65 3e-11
>AT5G47670.1 | chr5:19315061-19315975 FORWARD LENGTH=235
Length = 234
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
+P+AN++R+++++LP +C E++ F+ EA+E+ + E R+T+ ED
Sbjct: 63 MPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
L + LGFD Y++P+ Y+H YRE E
Sbjct: 123 LWAMSKLGFDDYIEPLTLYLHRYRELE 149
>AT1G09030.1 | chr1:2908611-2909030 REVERSE LENGTH=140
Length = 139
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ RL+K++LP +CA EF+ FV EASEK E+R+TV +D
Sbjct: 8 LPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDI 67
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFER 121
+ LG D Y D + ++H YRE ER
Sbjct: 68 WWALSTLGLDNYADAVGRHLHKYREAER 95
>AT1G21970.1 | chr1:7727750-7729571 REVERSE LENGTH=239
Length = 238
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
+P+AN++R+++K LP +C E++ FV EA+E+ + E R+T+ ED
Sbjct: 64 MPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDI 123
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
L + LGFD YVDP+ +I+ YRE E
Sbjct: 124 LWAMSKLGFDNYVDPLTVFINRYREIE 150
>AT4G14540.1 | chr4:8344663-8345148 FORWARD LENGTH=162
Length = 161
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 26 GGSATNAE----LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAK 81
GG+A+ E LP+AN+ R++KK LP +C EF+ F+ EAS+K +
Sbjct: 14 GGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQ 73
Query: 82 AEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120
E R+T+ +D L + LGF+ YV+P+ Y+ YRE E
Sbjct: 74 REKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVE 112
>AT3G53340.1 | chr3:19774667-19775991 REVERSE LENGTH=177
Length = 176
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++K+ LP +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 34 LPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDL 93
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
L + LGF+ Y+DP+ Y+ YRE E
Sbjct: 94 LWAMATLGFEDYIDPLKVYLMRYREME 120
>AT5G47640.1 | chr5:19309414-19309986 FORWARD LENGTH=191
Length = 190
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++KK LP +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 32 LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
L + LGF+ YV+P+ Y+ +RE E
Sbjct: 92 LWAMTTLGFEDYVEPLKVYLQRFREIE 118
>AT2G37060.1 | chr2:15576336-15577660 FORWARD LENGTH=174
Length = 173
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++K+ LP + +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 35 LPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDL 94
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
L + LGF+ Y++P+ Y+ YRE E
Sbjct: 95 LWAMATLGFEDYMEPLKVYLMRYREME 121
>AT2G38880.8 | chr2:16238685-16240316 FORWARD LENGTH=165
Length = 164
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++KK LP +C EF+ F+ EAS+K + E R+TV +D
Sbjct: 26 LPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDL 85
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYRE 118
L + LGF+ Y++P+ Y+ YRE
Sbjct: 86 LWAMATLGFEDYLEPLKIYLARYRE 110
>AT2G13570.1 | chr2:5655842-5656489 REVERSE LENGTH=216
Length = 215
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++KKVLP +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 41 LPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 100
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
+ + LGF+ YV P+ Y+ YR+ E
Sbjct: 101 IWAITTLGFEDYVAPLKVYLCKYRDTE 127
>AT2G47810.1 | chr2:19582938-19583420 REVERSE LENGTH=161
Length = 160
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 34 LPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
LP+AN+ R++K +LP +C EF+ FV EAS+K E R+TV +D
Sbjct: 56 LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115
Query: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
+ +LGFD Y + Y+H YR E
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLE 142
>AT5G08190.1 | chr5:2636204-2637125 FORWARD LENGTH=164
Length = 163
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 23 DGVGGSATNAELPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKA 82
D VG S +A LP A + ++IK++LP L +C VEF+ + E++E
Sbjct: 5 DIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNK 64
Query: 83 EHRRTVAPEDYLGSFGDLGFDRYVD 107
E +RT+APE L + LGF YV+
Sbjct: 65 EDKRTIAPEHVLKALQVLGFGEYVE 89
>AT5G23090.2 | chr5:7749391-7750203 FORWARD LENGTH=160
Length = 159
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 23 DGVGGSATNAELPMANLVRLIKKVLPXXXXXXXXXXXLTHDCAVEFVGFVGDEASEKAKA 82
D VG S +A LP A + ++IK++LP L +C VEF+ V E+++
Sbjct: 5 DIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNK 64
Query: 83 EHRRTVAPEDYLGSFGDLGFDRYVD 107
E +RT+APE L + LGF Y++
Sbjct: 65 EDKRTIAPEHVLKALQVLGFGEYIE 89
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,105,217
Number of extensions: 95765
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 12
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)