Os05g0573500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAP3.
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Os05g0573500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAP3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.2 | 0.323 | 9.07 | -1.26 | 0.269 | -1.82 | -0.306 | -0.417 | 0.0724 | 15.5 | 0.5181 | 1544 | -- | -- |
| 47.27 | 0.32 | 9.07 | -1.3 | 0.281 | -1.73 | -0.264 | -- | 0.0733 | 15.3 | 0.4801 | 1543 | -- | -- |
| 47.4 | 0.321 | 9.07 | -1.28 | 0.297 | -1.78 | -- | -0.259 | 0.0734 | 15.4 | 0.46 | 1536 | -- | -- |
| 47.44 | 0.321 | 9.07 | -1.3 | 0.29 | -1.73 | -- | -- | 0.0728 | 15.4 | 0.4687 | 1540 | -- | -- |
| 47.89 | 0.322 | 9.07 | -1.31 | -- | -1.85 | -- | 0.064 | 0.0733 | -- | 0.4166 | 1625 | -- | -- |
| 72.41 | 0.399 | 9.03 | -0.905 | 0.606 | -- | -0.343 | -- | 0.272 | 13.9 | -- | -- | -- | -- |
| 72.86 | 0.4 | 9.03 | -0.916 | 0.605 | -- | -- | -- | 0.27 | 13.9 | -- | -- | -- | -- |
| 47.91 | 0.322 | 9.07 | -1.29 | -- | -1.85 | -- | -- | 0.0797 | -- | 0.4311 | 1625 | -- | -- |
| 85.15 | 0.43 | 9.04 | -- | 0.384 | -1.04 | -- | -- | 0.261 | 14.8 | 1.803 | 1560 | -- | -- |
| 95.02 | 0.455 | 9.03 | -0.941 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 94.96 | 0.456 | 9.01 | -- | 0.622 | -- | -- | -- | 0.372 | 13.9 | -- | -- | -- | -- |
| 86.2 | 0.432 | 9.03 | -- | -- | -1.35 | -- | -- | 0.273 | -- | 1.71 | 1688 | -- | -- |
| 118.35 | 0.508 | 9.01 | -- | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 2 | 47.51 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 3 | 47.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 5 | 47.64 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 8 | 47.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 10 | 47.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 20 | 47.88 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 22 | 47.93 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 27 | 47.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 35 | 48.00 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 36 | 48.00 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 44 | 48.03 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 51 | 48.06 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 54 | 48.07 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 5 |
| 58 | 48.08 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 64 | 48.09 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 73 | 48.12 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 77 | 48.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 11 |
| 93 | 48.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 96 | 48.17 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 134 | 48.25 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 135 | 48.26 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 136 | 48.26 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 142 | 48.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 147 | 48.28 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 148 | 48.28 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 153 | 48.29 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 164 | 48.30 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 171 | 48.31 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 178 | 48.31 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 193 | 48.33 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 211 | 48.35 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 222 | 48.37 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 223 | 48.37 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 229 | 48.38 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 232 | 48.39 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 253 | 48.40 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 270 | 48.43 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 282 | 48.45 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 299 | 48.47 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 300 | 48.47 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 315 | 48.49 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 326 | 48.50 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 329 | 48.51 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 363 | 48.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 371 | 48.56 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 391 | 48.58 | radiation | 30 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 419 | 48.60 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 444 | 48.63 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 460 | 48.64 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 486 | 48.65 | radiation | 10 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 503 | 48.67 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 576 | 48.72 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 649 | 48.77 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 18 |
| 676 | 48.78 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 677 | 48.78 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 764 | 48.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 766 | 48.85 | radiation | 1 | 4320 | < th | dose independent | sin | 16 | NA |
| 812 | 48.88 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 820 | 48.89 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 840 | 48.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 856 | 48.92 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 870 | 48.93 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 874 | 48.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 894 | 48.96 | radiation | 1 | 4320 | > th | dose independent | sin | 16 | NA |
| 895 | 48.96 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 916 | 48.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 930 | 48.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 985 | 49.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 993 | 49.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 998 | 49.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |