BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0573500 Os05g0573500|AB095440
(143 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0573500 HAP3 251 9e-68
Os07g0606600 Similar to Nuclear factor Y transcription fact... 164 3e-41
Os03g0413000 Similar to Potential histone-like transcriptio... 162 8e-41
Os01g0834400 Similar to HAP3 160 3e-40
Os08g0174500 Similar to HAP3 157 2e-39
Os01g0935200 Histone-like transcription factor/archaeal his... 151 1e-37
Os02g0725700 Histone-like transcription factor/archaeal his... 141 2e-34
Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein 132 1e-31
Os01g0935100 115 1e-26
Os02g0725900 Histone-like transcription factor/archaeal his... 80 5e-16
>Os05g0573500 HAP3
Length = 143
Score = 251 bits (642), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDVVLNGDPGSSF 140
INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDVVLNGDPGSSF
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDVVLNGDPGSSF 140
Query: 141 EGM 143
EGM
Sbjct: 141 EGM 143
>Os07g0606600 Similar to Nuclear factor Y transcription factor subunit B homolog
Length = 224
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
+EQDRFLPIAN+ RIM+RA+P N KI+KD+KE+VQECVSEFISFIT EASDKC +EKRKT
Sbjct: 21 REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
INGDDL+W+M TLGFEDY++PLKLYL +RE EG+
Sbjct: 81 INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGE 115
>Os03g0413000 Similar to Potential histone-like transcription factor
Length = 219
Score = 162 bits (410), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 94/121 (77%), Gaps = 8/121 (6%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
+EQDRFLPIAN+ RIM++A+P N KI+KD+KE+VQECVSEFISFIT EASDKC +EKRKT
Sbjct: 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 82
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD-----TKG---SRASELPVKKDVVL 132
INGDDL+W+M TLGFEDYV+PLK YL +RE EG+ T G S AS P ++
Sbjct: 83 INGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAAASTTGAGTSAASTTPPQQQHTA 142
Query: 133 N 133
N
Sbjct: 143 N 143
>Os01g0834400 Similar to HAP3
Length = 118
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 86/92 (93%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
+EQDRFLPIANI RIM++AVP NGKIAKD+KE++QECVSEFISF+TSEASDKC KEKRKT
Sbjct: 27 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKT 86
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRET 112
ING+DL+++MGTLGFE+YV+PLK+YL YRE
Sbjct: 87 INGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
>Os08g0174500 Similar to HAP3
Length = 297
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 83/95 (87%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
KEQDRFLPIAN+ RIM+R++P N KI+K+SKE+VQECVSEFISF+T EASDKC +EKRKT
Sbjct: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
INGDDL+W+M TLGFE YV PLK YL YRE EG+
Sbjct: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 151
>Os01g0935200 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 177
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 82/95 (86%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
KEQDR LPIAN+GRIM++ +P N KI+K++KE++QECVSEFISF+T EASDKC KEKRKT
Sbjct: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
+NGDD+ W+ G LGF+DYV+P++ YL YRE EGD
Sbjct: 93 VNGDDVCWAFGALGFDDYVDPMRRYLNKYRELEGD 127
>Os02g0725700 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 254
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 82/98 (83%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
+EQDR +PIAN+ RIMRR +P + KI+ D+KE++QECVSE+ISFIT EA+++C +E+RKT
Sbjct: 31 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 90
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKG 118
I +D++W+M LGF+DYVEPL +YL YRE EG+++G
Sbjct: 91 ITAEDVLWAMSRLGFDDYVEPLGVYLHRYREFEGESRG 128
>Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein
Length = 250
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 73/93 (78%)
Query: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
+EQDR +PIAN+ RIMRR +P + KI+ D+KE +QECVSEFISF+T EA+D+C +E RKT
Sbjct: 30 REQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKT 89
Query: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETE 113
+ +DL+W+M LGF+DYV PL YLR RE E
Sbjct: 90 VTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 122
>Os01g0935100
Length = 144
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 23 QDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTIN 82
QD LPIAN+GRIM+ +P KI+K +KE++QEC +EFISF+T EAS++C +E+RKT+N
Sbjct: 5 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVN 64
Query: 83 GDDLIWSMGTLGFEDYVEPLKLYLRLYRETE 113
GDD+ +M +LG + Y + + YL+ YRE E
Sbjct: 65 GDDVCHAMRSLGLDHYADAMHRYLQRYREGE 95
>Os02g0725900 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 186
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 27 LPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDL 86
LP+AN+ R++++ +P KI +K +C EF+ F+ EAS+K E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 87 IWSMGTLGFEDYVEPLKLYLRLYRETE 113
+ S G LGF+ YV+P+ Y+ YRE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,134,369
Number of extensions: 150211
Number of successful extensions: 274
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 10
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)