Os07g0606600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclear factor Y transcription factor subunit B homolog.
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Os07g0606600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclear factor Y transcription factor subunit B homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.52 | 0.437 | 11.1 | -1.42 | 0.643 | 1.23 | 0.423 | 0.449 | -0.652 | 12.3 | 15.72 | 10 | -- | -- |
| 86.61 | 0.433 | 11.1 | -1.48 | 0.646 | 1.19 | 0.526 | -- | -0.668 | 12.4 | 16.4 | 8 | -- | -- |
| 87.02 | 0.434 | 11.1 | -1.34 | 0.636 | 1.26 | -- | 0.971 | -0.632 | 12.2 | 15.3 | 8 | -- | -- |
| 87.77 | 0.436 | 11.1 | -1.47 | 0.631 | 1.2 | -- | -- | -0.67 | 12.2 | 16.8 | 4 | -- | -- |
| 105.91 | 0.479 | 11.1 | -1.46 | -- | 1.97 | -- | 1.13 | -0.727 | -- | 12.11 | 3 | -- | -- |
| 102.55 | 0.475 | 11.1 | -1.24 | 0.982 | -- | 0.746 | -- | -0.487 | 13.1 | -- | -- | -- | -- |
| 104.86 | 0.48 | 11.1 | -1.21 | 0.98 | -- | -- | -- | -0.483 | 13 | -- | -- | -- | -- |
| 106.13 | 0.48 | 11.1 | -1.6 | -- | 1.74 | -- | -- | -0.769 | -- | 17.55 | 5 | -- | -- |
| 139.43 | 0.553 | 11.1 | -- | 0.829 | 0.58 | -- | -- | -0.424 | 12.8 | 16.8 | 4 | -- | -- |
| 164.64 | 0.6 | 11.1 | -1.25 | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
| 143.72 | 0.561 | 11 | -- | 1 | -- | -- | -- | -0.348 | 13.1 | -- | -- | -- | -- |
| 168.21 | 0.604 | 11.1 | -- | -- | 1.25 | -- | -- | -0.54 | -- | 19.7 | 3 | -- | -- |
| 205.93 | 0.67 | 11.1 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 2 | 77.44 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 10 | 78.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 14 | 78.22 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 33 | 79.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 70 | 80.24 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 16 |
| 73 | 80.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 111 | 81.20 | temperature | 25 | 30 | > th | dose independent | sin | 4 | NA |
| 120 | 81.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 128 | 81.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 134 | 81.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 141 | 81.72 | temperature | 25 | 30 | < th | dose independent | sin | 4 | NA |
| 159 | 81.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 191 | 82.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 263 | 82.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 340 | 83.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 375 | 83.48 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 16 |
| 383 | 83.58 | temperature | 25 | 30 | > th | dose independent | rect. | 2 | 18 |
| 384 | 83.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 419 | 83.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 500 | 84.25 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 12 |
| 506 | 84.27 | temperature | 25 | 30 | > th | dose independent | rect. | 2 | 14 |
| 518 | 84.34 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 21 |
| 553 | 84.50 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 8 |
| 566 | 84.55 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 10 |
| 655 | 85.00 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 14 |
| 674 | 85.07 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 713 | 85.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 742 | 85.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 776 | 85.46 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 11 |
| 817 | 85.60 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 833 | 85.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 845 | 85.70 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 11 | 19 |
| 873 | 85.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 919 | 85.93 | radiation | 10 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 981 | 86.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 995 | 86.18 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 2 |