Os03g0413000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potential histone-like transcription factor.
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Os03g0413000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potential histone-like transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.82 | 0.462 | 11.1 | -0.693 | 0.194 | -0.331 | 0.808 | 4.3 | -0.439 | 3.38 | 20.44 | 743 | -- | -- |
| 105.78 | 0.479 | 11.2 | -1.68 | 0.168 | 0.117 | -1.46 | -- | -0.739 | 9.32 | 24.6 | 1220 | -- | -- |
| 97.32 | 0.459 | 11.1 | -0.697 | 0.277 | -0.197 | -- | 4.48 | -0.424 | 5.8 | 19.52 | 830 | -- | -- |
| 106.14 | 0.48 | 11.3 | -2.16 | 0.283 | 0.469 | -- | -- | -0.907 | 6.15 | 31.87 | 47520 | -- | -- |
| 100.67 | 0.467 | 11.1 | -0.598 | -- | -0.299 | -- | 4.53 | -0.415 | -- | 20.39 | 832 | -- | -- |
| 106.33 | 0.483 | 11.3 | -1.64 | 0.154 | -- | -1.49 | -- | -0.723 | 9.38 | -- | -- | -- | -- |
| 111.77 | 0.495 | 11.3 | -1.7 | 0.284 | -- | -- | -- | -0.731 | 6.01 | -- | -- | -- | -- |
| 110.31 | 0.489 | 11.3 | -2.15 | -- | 0.468 | -- | -- | -0.906 | -- | 31.67 | 47520 | -- | -- |
| 138.17 | 0.547 | 11.1 | -- | 0.285 | -1.14 | -- | -- | -0.201 | 5.77 | 7.769 | 47520 | -- | -- |
| 115.94 | 0.503 | 11.3 | -1.7 | -- | -- | -- | -- | -0.725 | -- | -- | -- | -- | -- |
| 188.32 | 0.642 | 11.2 | -- | 0.26 | -- | -- | -- | -0.541 | 6.33 | -- | -- | -- | -- |
| 142.39 | 0.556 | 11.1 | -- | -- | -1.13 | -- | -- | -0.198 | -- | 6.066 | 47520 | -- | -- |
| 191.82 | 0.646 | 11.2 | -- | -- | -- | -- | -- | -0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.99 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 2 | 90.11 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 3 | 90.31 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 5 | 90.47 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 7 | 90.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 15 | 91.30 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 22 | 91.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 25 | 91.72 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 27 | 91.77 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 28 | 91.77 | wind | 1 | 43200 | < th | dose dependent | sin | 17 | NA |
| 30 | 91.79 | wind | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 42 | 92.13 | wind | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 52 | 92.35 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 56 | 92.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 17 |
| 74 | 92.77 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 81 | 92.84 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 83 | 92.90 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 142 | 93.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 206 | 94.04 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 207 | 94.05 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 222 | 94.16 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 227 | 94.20 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 230 | 94.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 235 | 94.23 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 262 | 94.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 270 | 94.40 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 304 | 94.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 330 | 94.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 406 | 95.15 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 432 | 95.25 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 445 | 95.30 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 17 |
| 448 | 95.31 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 486 | 95.52 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 493 | 95.57 | atmosphere | 995 | 90 | > th | dose dependent | sin | 0 | NA |
| 500 | 95.62 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 510 | 95.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 538 | 95.73 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 18 |
| 552 | 95.78 | atmosphere | 995 | 10 | > th | dose dependent | sin | 23 | NA |
| 564 | 95.83 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 568 | 95.83 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 582 | 95.88 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 589 | 95.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 591 | 95.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 592 | 95.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 594 | 95.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 595 | 95.94 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 600 | 95.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 602 | 95.96 | atmosphere | 1000 | 30 | > th | dose independent | sin | 20 | NA |
| 645 | 96.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 650 | 96.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 667 | 96.12 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 685 | 96.15 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 716 | 96.22 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 722 | 96.23 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 23 |
| 725 | 96.24 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 742 | 96.29 | radiation | 10 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 750 | 96.32 | atmosphere | 1000 | 30 | > th | dose independent | sin | 0 | NA |
| 751 | 96.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 764 | 96.34 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 778 | 96.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 815 | 96.41 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 825 | 96.42 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 826 | 96.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 838 | 96.44 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 18 |
| 859 | 96.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 884 | 96.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 885 | 96.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 904 | 96.51 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 906 | 96.51 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 910 | 96.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 924 | 96.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 936 | 96.55 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 19 |
| 942 | 96.56 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 952 | 96.57 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 980 | 96.58 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 989 | 96.60 | wind | 3 | 14400 | > th | dose independent | sin | 1 | NA |
| 990 | 96.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 999 | 96.61 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 22 | 2 |