Os01g0834400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAP3.
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Os01g0834400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAP3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.6 | 0.228 | 10.5 | -0.0361 | 0.279 | -0.168 | -0.316 | -1.12 | -0.149 | 5.08 | 25.02 | 1096 | -- | -- |
| 24.72 | 0.232 | 10.5 | 0.29 | 0.287 | -0.287 | -0.283 | -- | -0.0361 | 5.07 | 24.7 | 2589 | -- | -- |
| 23.84 | 0.227 | 10.5 | -0.0392 | 0.28 | -0.172 | -- | -1.14 | -0.147 | 5 | 25 | 1113 | -- | -- |
| 24.97 | 0.233 | 10.5 | 0.324 | 0.29 | -0.299 | -- | -- | -0.0373 | 5.22 | 24.7 | 2660 | -- | -- |
| 27.2 | 0.243 | 10.5 | -0.0118 | -- | -0.204 | -- | -1.22 | -0.135 | -- | 25 | 1861 | -- | -- |
| 26.98 | 0.244 | 10.5 | 0.221 | 0.26 | -- | -0.366 | -- | -0.128 | 5.43 | -- | -- | -- | -- |
| 27.3 | 0.245 | 10.5 | 0.221 | 0.258 | -- | -- | -- | -0.126 | 5.66 | -- | -- | -- | -- |
| 28.31 | 0.248 | 10.5 | 0.336 | -- | -0.303 | -- | -- | -0.0413 | -- | 24.7 | 3488 | -- | -- |
| 27.42 | 0.244 | 10.5 | -- | 0.284 | -0.205 | -- | -- | -0.104 | 5.2 | 25.1 | 2639 | -- | -- |
| 30.77 | 0.259 | 10.5 | 0.229 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 28.58 | 0.25 | 10.5 | -- | 0.262 | -- | -- | -- | -0.151 | 5.62 | -- | -- | -- | -- |
| 30.7 | 0.259 | 10.5 | -- | -- | -0.122 | -- | -- | -0.0933 | -- | 25.5 | 3500 | -- | -- |
| 32.15 | 0.265 | 10.5 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.84 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 22.99 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 23.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 36 | 23.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 39 | 23.14 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 44 | 23.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 45 | 23.20 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 48 | 23.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 50 | 23.27 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 51 | 23.27 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 55 | 23.28 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 60 | 23.29 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 65 | 23.31 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 69 | 23.32 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 73 | 23.33 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 77 | 23.35 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 84 | 23.37 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 102 | 23.42 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 127 | 23.46 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 150 | 23.52 | temperature | 25 | 1440 | > th | dose independent | sin | 6 | NA |
| 161 | 23.54 | temperature | 25 | 1440 | < th | dose independent | sin | 6 | NA |
| 171 | 23.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 219 | 23.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 220 | 23.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 246 | 23.60 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 271 | 23.62 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 284 | 23.62 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 301 | 23.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 304 | 23.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 305 | 23.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 310 | 23.64 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 319 | 23.65 | temperature | 25 | 43200 | < th | dose independent | sin | 13 | NA |
| 347 | 23.67 | temperature | 25 | 43200 | > th | dose independent | sin | 13 | NA |
| 366 | 23.67 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 375 | 23.67 | temperature | 25 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 393 | 23.68 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 394 | 23.68 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 411 | 23.68 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 439 | 23.69 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 452 | 23.70 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 465 | 23.70 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 470 | 23.71 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 532 | 23.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 543 | 23.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 550 | 23.72 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 551 | 23.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 16 |
| 586 | 23.73 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 600 | 23.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 638 | 23.74 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 640 | 23.74 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 651 | 23.74 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 657 | 23.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 693 | 23.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 694 | 23.75 | temperature | 10 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 696 | 23.75 | temperature | 30 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 870 | 23.78 | temperature | 20 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 924 | 23.79 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 931 | 23.79 | temperature | 20 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 949 | 23.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 974 | 23.80 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 995 | 23.80 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 1 |