BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0834400 Os01g0834400|AK108142
(118 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0834400 Similar to HAP3 243 2e-65
Os03g0413000 Similar to Potential histone-like transcriptio... 176 3e-45
Os07g0606600 Similar to Nuclear factor Y transcription fact... 176 4e-45
Os05g0573500 HAP3 160 2e-40
Os08g0174500 Similar to HAP3 158 8e-40
Os01g0935200 Histone-like transcription factor/archaeal his... 148 8e-37
Os02g0725700 Histone-like transcription factor/archaeal his... 143 3e-35
Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein 134 1e-32
Os01g0935100 119 4e-28
Os02g0725900 Histone-like transcription factor/archaeal his... 91 2e-19
Os08g0383700 Repressor protein 70 3e-13
>Os01g0834400 Similar to HAP3
Length = 118
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 GFLEGGAGMADAGHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETL 60
GFLEGGAGMADAGHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETL
Sbjct: 1 GFLEGGAGMADAGHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETL 60
Query: 61 QECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
QECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV
Sbjct: 61 QECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
>Os03g0413000 Similar to Potential histone-like transcription factor
Length = 219
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 97/114 (85%), Gaps = 4/114 (3%)
Query: 9 MADAGHDESGSPPRSGG----VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECV 64
M D+ +D G +GG REQDRFLPIAN+SRIMKKA+PAN KI+KDAKET+QECV
Sbjct: 1 MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
Query: 65 SEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
SEFISF+T EASDKCQ+EKRKTING+DLL+AM TLGFE+YVDPLK YLHK+RE+
Sbjct: 61 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREI 114
>Os07g0606600 Similar to Nuclear factor Y transcription factor subunit B homolog
Length = 224
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 96/107 (89%), Gaps = 3/107 (2%)
Query: 15 DESGSPPRSG---GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFV 71
+ESG P +G REQDRFLPIAN+SRIMK+A+PAN KI+KDAKET+QECVSEFISF+
Sbjct: 6 NESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFI 65
Query: 72 TSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
T EASDKCQ+EKRKTING+DLL+AM TLGFE+Y+DPLK+YLHK+RE+
Sbjct: 66 TGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFREL 112
>Os05g0573500 HAP3
Length = 143
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 86/92 (93%)
Query: 27 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKT 86
+EQDRFLPIANI RIM++AVP NGKIAKD+KE++QECVSEFISF+TSEASDKC KEKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 87 INGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
ING+DL+++MGTLGFE+YV+PLK+YL YRE
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRET 112
>Os08g0174500 Similar to HAP3
Length = 297
Score = 158 bits (400), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 85/93 (91%)
Query: 26 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 85
+EQDRFLPIAN+SRIMK+++PAN KI+K++KET+QECVSEFISFVT EASDKCQ+EKRK
Sbjct: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
Query: 86 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
TING+DLL+AM TLGFE YV PLK YL++YRE
Sbjct: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREA 148
>Os01g0935200 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 177
Score = 148 bits (374), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 82/93 (88%)
Query: 26 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 85
++EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISFVT EASDKC KEKRK
Sbjct: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
Query: 86 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYREV 118
T+NG+D+ +A G LGF++YVDP++ YL+KYRE+
Sbjct: 92 TVNGDDVCWAFGALGFDDYVDPMRRYLNKYREL 124
>Os02g0725700 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 254
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 81/92 (88%)
Query: 26 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 85
+REQDR +PIAN+ RIM++ +PA+ KI+ DAKET+QECVSE+ISF+T EA+++CQ+E+RK
Sbjct: 30 IREQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 89
Query: 86 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 117
TI ED+L+AM LGF++YV+PL +YLH+YRE
Sbjct: 90 TITAEDVLWAMSRLGFDDYVEPLGVYLHRYRE 121
>Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein
Length = 250
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 76/98 (77%)
Query: 20 PPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKC 79
PP + VREQDR +PIAN+ RIM++ +P + KI+ DAKE +QECVSEFISFVT EA+D+C
Sbjct: 23 PPAAAVVREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRC 82
Query: 80 QKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 117
+E RKT+ EDL++AM LGF++YV PL YL + RE
Sbjct: 83 HREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMRE 120
>Os01g0935100
Length = 144
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%)
Query: 29 QDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTIN 88
QD LPIAN+ RIMK +P KI+K AKET+QEC +EFISFVT EAS++C++E+RKT+N
Sbjct: 5 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVN 64
Query: 89 GEDLLFAMGTLGFEEYVDPLKIYLHKYRE 117
G+D+ AM +LG + Y D + YL +YRE
Sbjct: 65 GDDVCHAMRSLGLDHYADAMHRYLQRYRE 93
>Os02g0725900 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 186
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 33 LPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDL 92
LP+AN+ R++KK +P KI AK +C EF+ FV EAS+K + E R+T+ ED
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 93 LFAMGTLGFEEYVDPLKIYLHKYRE 117
L + G LGF+ YVDP+ Y+H YRE
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYRE 118
>Os08g0383700 Repressor protein
Length = 296
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 59/85 (69%)
Query: 25 GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKR 84
G ++D LP + + +I+K+ +P + ++A+DA++ L EC EFI+ ++SE+++ C +E +
Sbjct: 8 GKSKEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDK 67
Query: 85 KTINGEDLLFAMGTLGFEEYVDPLK 109
KTI E +L A+ LGF EY++ ++
Sbjct: 68 KTIAPEHVLRALQDLGFREYIEEVQ 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,363,320
Number of extensions: 164756
Number of successful extensions: 435
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 11
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)