Os08g0383700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Repressor protein.
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Os08g0383700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Repressor protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.28 | 0.19 | 12.3 | 1.19 | 0.169 | 0.432 | 0.179 | -0.979 | 0.533 | 3.22 | 28.91 | 62 | -- | -- |
| 17.34 | 0.195 | 12.3 | 1.01 | 0.161 | 0.449 | -0.175 | -- | 0.487 | 3.89 | 28.91 | 62 | -- | -- |
| 16.36 | 0.188 | 12.3 | 1.18 | 0.162 | 0.455 | -- | -0.899 | 0.538 | 3.43 | 29 | 60 | -- | -- |
| 17.2 | 0.193 | 12.3 | 1.02 | 0.216 | 0.454 | -- | -- | 0.488 | 3.54 | 25.2 | 50 | -- | -- |
| 17.43 | 0.194 | 12.3 | 1.18 | -- | 0.587 | -- | -0.794 | 0.548 | -- | 29.3 | 50 | -- | -- |
| 20.18 | 0.211 | 12.4 | 0.906 | 0.301 | -- | -0.103 | -- | 0.396 | 3.04 | -- | -- | -- | -- |
| 20.21 | 0.211 | 12.4 | 0.908 | 0.301 | -- | -- | -- | 0.396 | 3.03 | -- | -- | -- | -- |
| 18.31 | 0.199 | 12.3 | 1.07 | -- | 0.611 | -- | -- | 0.535 | -- | 29.02 | 50 | -- | -- |
| 36.04 | 0.28 | 12.4 | -- | 0.434 | -0.344 | -- | -- | 0.23 | 3.11 | 12.16 | 27666 | -- | -- |
| 25.39 | 0.235 | 12.4 | 0.921 | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
| 41.97 | 0.303 | 12.4 | -- | 0.319 | -- | -- | -- | 0.295 | 3.04 | -- | -- | -- | -- |
| 31.98 | 0.263 | 12.4 | -- | -- | -0.639 | -- | -- | 0.111 | -- | 36.88 | 47520 | -- | -- |
| 47.78 | 0.323 | 12.4 | -- | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.76 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 15.88 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 6 | 15.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 11 | 16.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 12 | 16.05 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 17 | 16.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 19 | 16.09 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 20 | 16.09 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 33 | 16.11 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 49 | 16.13 | temperature | 25.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 68 | 16.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 69 | 16.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 70 | 16.15 | temperature | 25.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 112 | 16.19 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 183 | 16.26 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 207 | 16.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 214 | 16.29 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 285 | 16.32 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 297 | 16.33 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 311 | 16.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 312 | 16.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 318 | 16.34 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 343 | 16.35 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 409 | 16.38 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 416 | 16.38 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 418 | 16.38 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 451 | 16.39 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 487 | 16.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 489 | 16.40 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 527 | 16.41 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 536 | 16.41 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 588 | 16.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 590 | 16.43 | radiation | 1.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 618 | 16.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 619 | 16.44 | radiation | 1.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 621 | 16.44 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 665 | 16.45 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 707 | 16.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 709 | 16.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 11 |
| 759 | 16.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 769 | 16.47 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 800 | 16.48 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 801 | 16.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 814 | 16.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 867 | 16.49 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 874 | 16.49 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 11 |
| 881 | 16.49 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 17 |
| 937 | 16.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 948 | 16.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 977 | 16.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |