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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0725700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone-like transcription factor/archaeal histone/DNA topoisomerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0201) R2 : 0.0105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.093 (0.0423) R2dN8 : 0.0136 R2N8 : 0.0105
σ : 0.378
deviance : 65.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.42 0.365 2.98 -0.128 0.0939 -0.342 -0.368 1.57 0.0687 5.98 1 16 -- --
62.44 0.368 2.96 -0.0647 0.107 -0.224 -0.528 -- 0.085 5.38 1.073 14 -- --
60.71 0.363 2.97 -0.138 0.0903 -0.352 -- 1.66 0.07 6.84 1 16 -- --
63.04 0.37 2.96 -0.0649 0.111 -0.225 -- -- 0.0878 6.7 1.091 14 -- --
61.13 0.364 2.98 -0.14 -- -0.393 -- 1.72 0.0702 -- 1.008 16 -- --
63.56 0.374 2.96 -0.0393 0.167 -- -0.497 -- 0.0829 5.4 -- -- -- --
64.15 0.375 2.96 -0.04 0.166 -- -- -- 0.0853 5.85 -- -- -- --
63.62 0.371 2.96 -0.0682 -- -0.273 -- -- 0.0901 -- 1.099 14 -- --
63.15 0.37 2.96 -- 0.112 -0.216 -- -- 0.0946 6.68 1.092 14 -- --
65.58 0.378 2.96 -0.0349 -- -- -- -- 0.0891 -- -- -- -- --
64.19 0.375 2.96 -- 0.165 -- -- -- 0.0897 5.86 -- -- -- --
63.74 0.372 2.96 -- -- -0.265 -- -- 0.0976 -- 1.092 14 -- --
65.61 0.378 2.96 -- -- -- -- -- 0.093 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.73 humidity 90.0 10 > th dose dependent rect. 2 1
2 52.93 atmosphere 1010.0 10 < th dose dependent rect. 2 1
7 53.93 temperature 20.0 10 > th dose independent rect. 2 1
8 54.04 humidity 90.0 10 > th dose independent rect. 2 1
10 54.12 wind 3.0 10 < th dose independent rect. 2 1
13 54.24 wind 1.0 30 > th dose independent rect. 2 1
17 54.36 atmosphere 1000.0 10 > th dose independent rect. 2 1
19 54.39 temperature 10.0 10 > th dose independent rect. 2 1
21 54.39 temperature 30.0 10 < th dose independent rect. 2 1
22 54.39 humidity 50.0 10 > th dose independent rect. 2 1
26 54.39 atmosphere 1010.0 10 < th dose independent rect. 2 1
28 54.39 radiation 1.0 10 < th dose independent rect. 2 1
33 54.39 precipitation 0.1 10 < th dose independent rect. 2 1
34 54.39 temperature 10.0 10 > th dose independent rect. 3 23
35 54.39 radiation 1.0 10 < th dose dependent rect. 2 1
40 54.39 precipitation 0.1 10 < th dose dependent rect. 2 1
42 54.41 wind 9.0 10 < th dose dependent rect. 2 1
45 54.46 temperature 10.0 10 > th dose dependent rect. 2 1
46 54.48 temperature 30.0 10 < th dose dependent rect. 2 1
48 54.50 atmosphere 995.0 10 > th dose independent rect. 3 23
87 54.77 wind 1.0 90 < th dose dependent rect. 24 1
89 54.79 atmosphere 995.0 10 > th dose dependent rect. 2 1
101 55.03 radiation 10.0 43200 < th dose dependent rect. 3 1
106 55.06 wind 9.0 1440 < th dose independent rect. 3 1
107 55.06 temperature 10.0 1440 > th dose independent rect. 3 1
110 55.06 temperature 30.0 1440 < th dose independent rect. 3 1
114 55.06 humidity 50.0 1440 > th dose independent rect. 3 1
123 55.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
124 55.06 radiation 1.0 1440 < th dose independent rect. 3 1
144 55.06 temperature 10.0 1440 > th dose independent rect. 4 23
147 55.06 temperature 30.0 30 < th dose independent rect. 3 23
148 55.06 radiation 1.0 1440 < th dose dependent rect. 3 1
164 55.12 precipitation 0.1 10 < th dose independent rect. 3 23
165 55.12 precipitation 0.1 10 < th dose dependent rect. 3 23
169 55.21 wind 1.0 90 < th dose independent rect. 24 3
198 56.18 wind 9.0 30 < th dose independent rect. 3 23
217 56.89 humidity 50.0 30 > th dose independent rect. 3 23
278 57.60 wind 1.0 90 < th dose independent rect. 9 18
292 57.71 wind 1.0 90 < th dose independent rect. 11 16
377 58.65 wind 1.0 90 < th dose dependent rect. 9 18
383 58.71 wind 1.0 90 > th dose independent rect. 3 22
506 59.04 wind 1.0 10 < th dose independent rect. 6 21
520 59.13 wind 1.0 10 < th dose independent rect. 9 18
550 59.18 atmosphere 1015.0 30 < th dose independent rect. 3 23
641 59.73 humidity 90.0 90 < th dose independent rect. 2 1
695 59.87 radiation 40.0 90 < th dose independent rect. 11 16
696 59.88 wind 1.0 10 < th dose independent rect. 11 16
764 60.15 radiation 10.0 30 < th dose dependent rect. 3 23
766 60.16 precipitation 0.1 720 < th dose independent rect. 19 8
770 60.16 precipitation 0.1 720 < th dose dependent rect. 19 8
774 60.18 wind 9.0 720 < th dose independent rect. 19 8
780 60.19 wind 1.0 30 > th dose dependent rect. 2 1
787 60.21 atmosphere 995.0 30 > th dose dependent rect. 3 23
794 60.22 humidity 50.0 30 > th dose dependent rect. 3 22
795 60.23 temperature 10.0 720 > th dose independent rect. 7 8
796 60.23 atmosphere 1015.0 720 < th dose independent rect. 7 8
797 60.23 temperature 10.0 720 > th dose independent rect. 15 16
810 60.26 atmosphere 995.0 720 > th dose independent rect. 7 8
814 60.27 temperature 30.0 90 < th dose independent rect. 3 12
826 60.30 temperature 10.0 720 > th dose independent rect. 19 8
827 60.30 temperature 30.0 720 < th dose independent rect. 19 8
828 60.30 humidity 50.0 720 > th dose independent rect. 19 8
829 60.30 atmosphere 995.0 720 > th dose independent rect. 19 8
830 60.30 radiation 1.0 720 < th dose independent rect. 19 8
835 60.30 temperature 10.0 720 > th dose independent rect. 3 16
838 60.30 radiation 1.0 720 < th dose dependent rect. 19 8
845 60.31 radiation 1.0 90 < th dose independent rect. 3 22
850 60.32 wind 3.0 30 < th dose dependent rect. 1 9
854 60.33 precipitation 0.1 720 < th dose independent rect. 15 16
857 60.33 precipitation 0.1 720 < th dose dependent rect. 15 16
948 60.39 atmosphere 995.0 720 > th dose independent rect. 15 16
968 60.43 atmosphere 995.0 720 > th dose independent rect. 3 16
970 60.44 temperature 10.0 720 > th dose independent rect. 15 8
971 60.44 temperature 10.0 720 > th dose independent rect. 23 16
978 60.47 temperature 10.0 720 > th dose independent rect. 3 8
979 60.47 atmosphere 995.0 720 > th dose independent rect. 3 8
980 60.47 temperature 10.0 720 > th dose independent rect. 11 16
986 60.49 humidity 50.0 720 > th dose independent rect. 3 8
998 60.52 precipitation 0.1 720 < th dose independent rect. 15 8