Os01g0935200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-like transcription factor/archaeal histone/DNA topoisomerase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0935200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Histone-like transcription factor/archaeal histone/DNA topoisomerase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.02 | 0.716 | 3.12 | 1.38 | 0.515 | -1.09 | 0.262 | 1.97 | 0.153 | 20.7 | 21.14 | 728 | -- | -- |
| 234.03 | 0.712 | 3.17 | 0.962 | 0.457 | -0.939 | 0.698 | -- | 0.0386 | 21.1 | 20.61 | 781 | -- | -- |
| 231.89 | 0.709 | 3.11 | 1.51 | 0.587 | -1.2 | -- | 3.03 | 0.175 | 20.4 | 23.11 | 717 | -- | -- |
| 235.23 | 0.714 | 3.17 | 0.958 | 0.416 | -0.936 | -- | -- | 0.0324 | 21.6 | 19.2 | 878 | -- | -- |
| 239.06 | 0.72 | 3.12 | 1.24 | -- | -0.933 | -- | 1.44 | 0.0787 | -- | 23.1 | 1663 | -- | -- |
| 252.96 | 0.746 | 3.2 | 0.694 | 0.184 | -- | 0.47 | -- | -0.143 | 21.5 | -- | -- | -- | -- |
| 253.77 | 0.746 | 3.2 | 0.677 | 0.184 | -- | -- | -- | -0.143 | 21.2 | -- | -- | -- | -- |
| 236.9 | 0.717 | 3.15 | 1.01 | -- | -1.05 | -- | -- | 0.0501 | -- | 14.51 | 1536 | -- | -- |
| 254.51 | 0.743 | 3.23 | -- | 0.304 | -0.577 | -- | -- | -0.285 | 21.7 | 28.6 | 995 | -- | -- |
| 255.73 | 0.747 | 3.2 | 0.677 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 265.84 | 0.763 | 3.22 | -- | 0.184 | -- | -- | -- | -0.219 | 21.5 | -- | -- | -- | -- |
| 257.61 | 0.748 | 3.23 | -- | -- | -0.45 | -- | -- | -0.296 | -- | 29.01 | 1457 | -- | -- |
| 267.83 | 0.764 | 3.21 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 225.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 225.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 4 | 226.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 5 | 226.13 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 6 | 226.39 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 11 | 226.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 15 | 226.78 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 17 | 226.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 18 | 226.94 | temperature | 20.0 | 720 | > th | dose dependent | sin | 23 | NA |
| 25 | 227.15 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 39 | 227.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 41 | 227.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 42 | 227.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 70 | 227.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 76 | 227.73 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 96 | 227.94 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 97 | 227.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 98 | 227.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 100 | 227.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 108 | 228.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 109 | 228.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 118 | 228.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 122 | 228.17 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 146 | 228.39 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 154 | 228.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 157 | 228.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 158 | 228.47 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 174 | 228.54 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 178 | 228.55 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 197 | 228.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 258 | 228.93 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 268 | 228.97 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 302 | 229.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 314 | 229.17 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 330 | 229.18 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 377 | 229.33 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 392 | 229.39 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 397 | 229.41 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 427 | 229.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 439 | 229.54 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 456 | 229.60 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 502 | 229.72 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 522 | 229.79 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 579 | 229.94 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 586 | 229.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 608 | 230.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 650 | 230.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 654 | 230.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 659 | 230.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 668 | 230.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 683 | 230.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 701 | 230.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 704 | 230.23 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 753 | 230.28 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 776 | 230.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 777 | 230.30 | radiation | 1.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 871 | 230.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 909 | 230.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 917 | 230.47 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 930 | 230.50 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 951 | 230.53 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 967 | 230.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |