Os08g0174500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAP3.
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Os08g0174500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAP3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.14 | 0.634 | 9.73 | -2.32 | 2.61 | -2.89 | 2.09 | 3.6 | -0.55 | 18 | 0.93 | 90 | 3.98 | 2.01 |
| 187.01 | 0.637 | 9.73 | -2.42 | 2.61 | -2.81 | 1.51 | -- | -0.547 | 18 | 0.93 | 91 | 3.97 | 2.02 |
| 192.41 | 0.646 | 9.73 | -2.4 | 2.57 | -2.97 | -- | 3.35 | -0.556 | 18 | 0.9203 | 88 | 3.98 | 2.01 |
| 192.75 | 0.647 | 9.73 | -2.44 | 2.61 | -2.81 | -- | -- | -0.552 | 18 | 0.9278 | 91 | 3.97 | 2 |
| 274.15 | 0.771 | 9.57 | -1.95 | -- | -3.34 | -- | 2.14 | -0.172 | -- | -40.03 | 336 | 0.565 | 6.52 |
| 288.5 | 0.796 | 9.78 | -2.48 | 3.27 | -- | 1.58 | -- | -0.672 | 18.1 | -- | -- | -- | -- |
| 294.65 | 0.804 | 9.77 | -2.49 | 3.28 | -- | -- | -- | -0.666 | 18.1 | -- | -- | -- | -- |
| 239.58 | 0.721 | 9.67 | -2.37 | -- | -3.27 | -- | -- | -0.441 | -- | -9.62 | 338 | 0.367 | 6.65 |
| 353.6 | 0.876 | 9.73 | -- | 2.68 | -2.66 | -- | -- | -0.503 | 18 | 0.63 | 91 | 3.97 | 2.02 |
| 850.76 | 1.36 | 9.72 | -2.58 | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
| 458.04 | 1 | 9.71 | -- | 3.31 | -- | -- | -- | -0.389 | 18 | -- | -- | -- | -- |
| 393.1 | 0.923 | 9.6 | -- | -- | -3.39 | -- | -- | -0.205 | -- | -8.667 | 352 | 0.186 | 6.6 |
| 1026.92 | 1.5 | 9.65 | -- | -- | -- | -- | -- | -0.454 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.77 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 13 | 183.53 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 22 |
| 15 | 184.51 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 22 |
| 16 | 184.62 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 2 |
| 20 | 184.94 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 24 | 185.38 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 2 |
| 25 | 185.38 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 29 | 185.68 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 31 | 185.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 32 | 185.68 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 35 | 185.68 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 36 | 185.68 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 37 | 185.68 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 40 | 185.68 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 57 | 185.86 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 67 | 187.36 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 81 | 187.85 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 87 | 188.33 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 88 | 188.35 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 92 | 188.66 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 7 | 22 |
| 93 | 188.66 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 7 | 22 |
| 95 | 188.67 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 138 | 189.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 144 | 190.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 162 | 190.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 185 | 192.12 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 227 | 193.66 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 229 | 193.70 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 247 | 194.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 7 | 22 |
| 373 | 198.29 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 401 | 199.07 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 22 | 7 |
| 419 | 200.11 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 480 | 201.83 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 2 |
| 489 | 202.32 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 493 | 202.44 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 506 | 202.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 508 | 202.52 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 521 | 202.94 | radiation | 1.0 | 10 | > th | dose independent | sin | 10 | NA |
| 540 | 203.23 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 572 | 204.33 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 12 |
| 584 | 204.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 592 | 204.64 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 619 | 205.13 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 626 | 205.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 627 | 205.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 643 | 205.84 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 646 | 205.90 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 655 | 206.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 658 | 206.12 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 668 | 206.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 669 | 206.19 | temperature | 30.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 670 | 206.19 | humidity | 50.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 673 | 206.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 674 | 206.19 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 679 | 206.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 681 | 206.19 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 682 | 206.24 | radiation | 1.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 716 | 206.81 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 719 | 206.92 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 720 | 206.92 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 721 | 206.92 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 724 | 206.92 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 725 | 206.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 730 | 206.92 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 731 | 206.92 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 732 | 206.92 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 761 | 207.15 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 16 |
| 762 | 207.15 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 782 | 207.59 | radiation | 1.0 | 10 | < th | dose independent | sin | 10 | NA |
| 787 | 207.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 788 | 207.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 789 | 207.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 813 | 207.82 | wind | 9.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 815 | 207.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 816 | 207.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 817 | 207.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 818 | 207.83 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 824 | 208.01 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 857 | 208.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 864 | 208.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 897 | 208.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 7 |
| 899 | 208.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 903 | 208.97 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 905 | 209.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 945 | 209.83 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 960 | 210.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 962 | 210.09 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 969 | 210.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 971 | 210.28 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 17 |