BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0174500 Os08g0174500|AY062182
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14540.1 | chr4:8344663-8345148 FORWARD LENGTH=162 182 2e-46
AT5G47640.1 | chr5:19309414-19309986 FORWARD LENGTH=191 177 6e-45
AT2G13570.1 | chr2:5655842-5656489 REVERSE LENGTH=216 171 3e-43
AT3G53340.1 | chr3:19774667-19775991 REVERSE LENGTH=177 169 1e-42
AT2G37060.1 | chr2:15576336-15577660 FORWARD LENGTH=174 169 2e-42
AT2G47810.1 | chr2:19582938-19583420 REVERSE LENGTH=161 158 3e-39
AT2G38880.8 | chr2:16238685-16240316 FORWARD LENGTH=165 157 7e-39
AT5G47670.1 | chr5:19315061-19315975 FORWARD LENGTH=235 151 4e-37
AT1G21970.1 | chr1:7727750-7729571 REVERSE LENGTH=239 147 6e-36
AT1G09030.1 | chr1:2908611-2909030 REVERSE LENGTH=140 137 6e-33
AT5G08190.1 | chr5:2636204-2637125 FORWARD LENGTH=164 65 4e-11
AT5G23090.2 | chr5:7749391-7750203 FORWARD LENGTH=160 65 4e-11
AT2G27470.1 | chr2:11745196-11746375 REVERSE LENGTH=276 53 2e-07
>AT4G14540.1 | chr4:8344663-8345148 FORWARD LENGTH=162
Length = 161
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 93/101 (92%)
Query: 53 DSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQRE 112
++ +EQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEASDKCQRE
Sbjct: 16 NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75
Query: 113 KRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
KRKTINGDDLLWAMTTLGFE YV PLK YL +YRE EGEK
Sbjct: 76 KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116
>AT5G47640.1 | chr5:19309414-19309986 FORWARD LENGTH=191
Length = 190
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 91/97 (93%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
+EQDRFLPIANVSRIMK++LPANAKISK++KET+QECVSEFISFVTGEASDKCQ+EKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
INGDDLLWAMTTLGFE YV PLK YL R+RE EGE+
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122
>AT2G13570.1 | chr2:5655842-5656489 REVERSE LENGTH=216
Length = 215
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/98 (80%), Positives = 88/98 (89%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
KEQDRFLPIANV RIMK+ LP N KISK++KETVQECVSEFISFVTGEASDKCQREKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKAD 154
INGDD++WA+TTLGFE YV PLK YL +YR+ EGEK +
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVN 132
>AT3G53340.1 | chr3:19774667-19775991 REVERSE LENGTH=177
Length = 176
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/96 (80%), Positives = 85/96 (88%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
+EQDRFLPIAN+SRIMKR LP N KI+K++KET+QECVSEFISFVT EASDKCQREKRK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 151
TINGDDLLWAM TLGFE Y+ PLK YL RYRE EG+
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
>AT2G37060.1 | chr2:15576336-15577660 FORWARD LENGTH=174
Length = 173
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/95 (82%), Positives = 85/95 (89%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
+EQDRFLPIAN+SRIMKR LPAN KI+K++KE VQECVSEFISFVT EASDKCQREKRKT
Sbjct: 29 REQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKT 88
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 151
INGDDLLWAM TLGFE Y+ PLK YL RYRE EG+
Sbjct: 89 INGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123
>AT2G47810.1 | chr2:19582938-19583420 REVERSE LENGTH=161
Length = 160
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 82/99 (82%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
KEQDR LPIANV RIMK LPANAK+SKE+KET+QECVSEFISFVTGEASDKC +EKRK
Sbjct: 49 VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKAD 154
T+NGDD+ WAM LGF+ Y LK YL+RYR EGEK +
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPN 147
>AT2G38880.8 | chr2:16238685-16240316 FORWARD LENGTH=165
Length = 164
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 82/93 (88%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
+EQDR+LPIAN+SRIMK++LP N KI K++K+TVQECVSEFISF+T EASDKCQ+EKRK
Sbjct: 19 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREA 148
T+NGDDLLWAM TLGFE Y+ PLK YL RYRE
Sbjct: 79 TVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111
>AT5G47670.1 | chr5:19315061-19315975 FORWARD LENGTH=235
Length = 234
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 85/98 (86%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
+EQDRF+PIANV RIM+R LPA+AKIS +SKET+QECVSE+ISF+TGEA+++CQRE+RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
TI +D+LWAM+ LGF+ Y+ PL YL+RYRE EGE+
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERG 153
>AT1G21970.1 | chr1:7727750-7729571 REVERSE LENGTH=239
Length = 238
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 87/101 (86%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
A+EQD+++PIANV RIM+++LP++AKIS ++KET+QECVSE+ISFVTGEA+++CQRE+RK
Sbjct: 57 AREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRK 116
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVL 156
TI +D+LWAM+ LGF+ YV PL ++NRYRE E ++ L
Sbjct: 117 TITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSAL 157
>AT1G09030.1 | chr1:2908611-2909030 REVERSE LENGTH=140
Length = 139
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%)
Query: 58 EQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTI 117
++DR LPIANV R+MK+ LP+NAKISKE+K+TVQEC +EFISFVT EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 118 NGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKAD 154
NGDD+ WA++TLG + Y + +L++YREAE E+ +
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTE 99
>AT5G08190.1 | chr5:2636204-2637125 FORWARD LENGTH=164
Length = 163
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 53/77 (68%)
Query: 59 QDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTIN 118
+D LP A +++I+K LPA+ ++++++++ + EC EFI+ ++ E+++ C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIA 71
Query: 119 GDDLLWAMTTLGFEAYV 135
+ +L A+ LGF YV
Sbjct: 72 PEHVLKALQVLGFGEYV 88
>AT5G23090.2 | chr5:7749391-7750203 FORWARD LENGTH=160
Length = 159
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 52/77 (67%)
Query: 59 QDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTIN 118
+D LP A +++I+K LP + ++++++++ + EC EFI+ V+ E++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 119 GDDLLWAMTTLGFEAYV 135
+ +L A+ LGF Y+
Sbjct: 72 PEHVLKALQVLGFGEYI 88
>AT2G27470.1 | chr2:11745196-11746375 REVERSE LENGTH=276
Length = 275
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 63 LPIANVSRIMKRSLPA-----NAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTI 117
LP+A V R++K+ L + I KE+ E FI +++ A+D C+ +R+T+
Sbjct: 11 LPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARRQTM 70
Query: 118 NGDDLLWAMTTLGFEAYVGPLKSYLNRY 145
DD+ A+ + F ++ PLKS L +
Sbjct: 71 KADDVFKALEEMDFSEFLEPLKSSLEDF 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,761,081
Number of extensions: 100798
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 13
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)