BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0174500 Os08g0174500|AY062182
(297 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0174500 Similar to HAP3 308 4e-84
Os07g0606600 Similar to Nuclear factor Y transcription fact... 184 8e-47
Os03g0413000 Similar to Potential histone-like transcriptio... 182 3e-46
Os01g0935200 Histone-like transcription factor/archaeal his... 157 1e-38
Os01g0834400 Similar to HAP3 157 1e-38
Os05g0573500 HAP3 156 2e-38
Os02g0725700 Histone-like transcription factor/archaeal his... 149 2e-36
Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein 138 5e-33
Os01g0935100 128 4e-30
Os02g0725900 Histone-like transcription factor/archaeal his... 83 2e-16
>Os08g0174500 Similar to HAP3
Length = 297
Score = 308 bits (788), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/297 (57%), Positives = 170/297 (57%)
Query: 1 MKSRKSYGHLLSPVGSPPLDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPAKEQD 60
MKSRKSYGHLLSPVGSPPLDN DSPAKEQD
Sbjct: 1 MKSRKSYGHLLSPVGSPPLDNESGEAAAAAAAGGGGCGSSAGYVVYGGGGGGDSPAKEQD 60
Query: 61 RFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGD 120
RFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGD
Sbjct: 61 RFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGD 120
Query: 121 DLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVLXXXXXXXXXXXXXXXXXXXXXXXX 180
DLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVL
Sbjct: 121 DLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVLGGAGGAAAARHGEGGCCGGGGGGA 180
Query: 181 XXVVIDGHYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNAGAGSXXXXXXXXXX 240
VVIDGHYP YNAGAGS
Sbjct: 181 DGVVIDGHYPLAGGLSHSHHGHQQQDGGGDVGLMMGGGDAGVGYNAGAGSTTTAFYAPAA 240
Query: 241 XXXSGNKAYCGGDGSRVMXXXXXXXXXXXXXXXXXXXXXXXXHLHGVQWFRLKRNTN 297
SGNKAYCGGDGSRVM HLHGVQWFRLKRNTN
Sbjct: 241 TAASGNKAYCGGDGSRVMEFEGIGGEEESGGGGGGGERGFAGHLHGVQWFRLKRNTN 297
>Os07g0606600 Similar to Nuclear factor Y transcription factor subunit B homolog
Length = 224
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 94/98 (95%)
Query: 56 AKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRK 115
A+EQDRFLPIANVSRIMKR+LPANAKISK++KETVQECVSEFISF+TGEASDKCQREKRK
Sbjct: 20 AREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRK 79
Query: 116 TINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
TINGDDLLWAMTTLGFE Y+ PLK YL+++RE EGEKA
Sbjct: 80 TINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA 117
>Os03g0413000 Similar to Potential histone-like transcription factor
Length = 219
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/100 (84%), Positives = 94/100 (94%)
Query: 54 SPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREK 113
S +EQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEASDKCQREK
Sbjct: 20 SSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 79
Query: 114 RKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA 153
RKTINGDDLLWAMTTLGFE YV PLK YL+++RE EGE+A
Sbjct: 80 RKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERA 119
>Os01g0935200 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 177
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 83/96 (86%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
KEQDR LPIANV RIMK+ LP NAKISKE+KET+QECVSEFISFVTGEASDKC +EKRKT
Sbjct: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEK 152
+NGDD+ WA LGF+ YV P++ YLN+YRE EG++
Sbjct: 93 VNGDDVCWAFGALGFDDYVDPMRRYLNKYRELEGDR 128
>Os01g0834400 Similar to HAP3
Length = 118
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 85/91 (93%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
+EQDRFLPIAN+SRIMK+++PAN KI+K++KET+QECVSEFISFVT EASDKCQ+EKRKT
Sbjct: 27 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKT 86
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYRE 147
ING+DLL+AM TLGFE YV PLK YL++YRE
Sbjct: 87 INGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 117
>Os05g0573500 HAP3
Length = 143
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 83/95 (87%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
KEQDRFLPIAN+ RIM+R++P N KI+K+SKE+VQECVSEFISF+T EASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 151
INGDDL+W+M TLGFE YV PLK YL YRE EG+
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
>Os02g0725700 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 254
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 84/99 (84%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
+EQDR +PIANV RIM+R LPA+AKIS ++KET+QECVSE+ISF+TGEA+++CQRE+RKT
Sbjct: 31 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 90
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADV 155
I +D+LWAM+ LGF+ YV PL YL+RYRE EGE V
Sbjct: 91 ITAEDVLWAMSRLGFDDYVEPLGVYLHRYREFEGESRGV 129
>Os06g0285200 Similar to Leafy cotyledon 1-like L1L protein
Length = 250
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 75/93 (80%)
Query: 57 KEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKT 116
+EQDR +PIANV RIM+R LP +AKIS ++KE +QECVSEFISFVTGEA+D+C RE RKT
Sbjct: 30 REQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKT 89
Query: 117 INGDDLLWAMTTLGFEAYVGPLKSYLNRYREAE 149
+ +DL+WAM LGF+ YV PL +YL R RE E
Sbjct: 90 VTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 122
>Os01g0935100
Length = 144
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%)
Query: 59 QDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTIN 118
QD LPIANV RIMK LP AKISK +KET+QEC +EFISFVTGEAS++C+RE+RKT+N
Sbjct: 5 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVN 64
Query: 119 GDDLLWAMTTLGFEAYVGPLKSYLNRYREAE 149
GDD+ AM +LG + Y + YL RYRE E
Sbjct: 65 GDDVCHAMRSLGLDHYADAMHRYLQRYREGE 95
>Os02g0725900 Histone-like transcription factor/archaeal histone/DNA
topoisomerase family protein
Length = 186
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%)
Query: 63 LPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 122
LP+AN+ R++K+ LP AKI +K +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 123 LWAMTTLGFEAYVGPLKSYLNRYREAE 149
L + LGF+ YV P+ +Y++ YRE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,024,973
Number of extensions: 155682
Number of successful extensions: 193
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 10
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)