BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0535700 Os07g0535700|AK063410
(335 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0535700 Galactose oxidase, central domain containing p... 661 0.0
Os07g0535200 Cyclin-like F-box domain containing protein 466 e-132
Os07g0535100 Cyclin-like F-box domain containing protein 462 e-130
Os07g0535300 Cyclin-like F-box domain containing protein 451 e-127
Os05g0172100 Galactose oxidase, central domain containing p... 228 6e-60
Os05g0172500 Cyclin-like F-box domain containing protein 228 7e-60
Os05g0175960 Cyclin-like F-box domain containing protein 201 8e-52
Os05g0177400 Cyclin-like F-box domain containing protein 185 3e-47
Os05g0139200 Cyclin-like F-box domain containing protein 179 2e-45
Os05g0177000 Cyclin-like F-box domain containing protein 179 3e-45
Os05g0172400 135 6e-32
Os05g0177100 Conserved hypothetical protein 104 1e-22
Os05g0175920 80 3e-15
Os01g0380800 Cyclin-like F-box domain containing protein 79 4e-15
Os05g0139300 Cyclin-like F-box domain containing protein 73 2e-13
>Os07g0535700 Galactose oxidase, central domain containing protein
Length = 335
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/335 (95%), Positives = 319/335 (95%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI
Sbjct: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
Query: 61 LDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDPAISSH 120
LDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDPAISSH
Sbjct: 61 LDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDPAISSH 120
Query: 121 FHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVFL 180
FHVL ALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVFL
Sbjct: 121 FHVLEYVEDEEYVEDEDEYDALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVFL 180
Query: 181 NGFLHSVTTCDIVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDILELSIW 240
NGFLHSVTTCDIVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDILELSIW
Sbjct: 181 NGFLHSVTTCDIVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDILELSIW 240
Query: 241 FLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHNTLMAYEM 300
FLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHNTLMAYEM
Sbjct: 241 FLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHNTLMAYEM 300
Query: 301 DRKEVRVIRKLGHESCLPYLPYVPMFSESLPDGWC 335
DRKEVRVIRKLGHESCLPYLPYVPMFSESLPDGWC
Sbjct: 301 DRKEVRVIRKLGHESCLPYLPYVPMFSESLPDGWC 335
>Os07g0535200 Cyclin-like F-box domain containing protein
Length = 377
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/340 (69%), Positives = 257/340 (75%), Gaps = 16/340 (4%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
IAD EHRKKLPQTLSGFFYKSI ERCP A HFTN +G+G+PL+ P+FSFLPQC VV
Sbjct: 46 IADREHRKKLPQTLSGFFYKSISGERCPCSAHHFTNVSGKGVPLIYPSFSFLPQCDTVVP 105
Query: 61 LDSCNGLLLCRC------HVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFD 114
LD CNGLLLCRC + E F YAVCNPAT E VMLPDA+WA E R ACLCFD
Sbjct: 106 LDCCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKEWVMLPDADWANGETRIACLCFD 165
Query: 115 PAISSHFHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVD 174
PAISSHFHVL VTGV IYSS+TGLW+LHV+GW D+V + +
Sbjct: 166 PAISSHFHVLEYVEAEYED---------VTGVEIYSSETGLWTLHVSGWGDDVFLRHWAN 216
Query: 175 RTRVFLNGFLHSVT-TCDIVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPND 233
VFLNGFLHS T +I VDMEGKKWR I MP+P+GD GIIHQTQGRLCAFNVDP+D
Sbjct: 217 PRSVFLNGFLHSATCAAEIAVVDMEGKKWRTIAMPEPEGDTGIIHQTQGRLCAFNVDPDD 276
Query: 234 ILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHN 293
I +LSIW LEDYDTDNWILKHTVSS+ LFG KKYQ FDYQ+I VHPECNLIFFVYGW
Sbjct: 277 IFKLSIWILEDYDTDNWILKHTVSSLRLFGGKKYQFGFDYQIIVVHPECNLIFFVYGWDK 336
Query: 294 TLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLPDG 333
TLMAYEMDRKEVRVIR LGH+S PYLPYVP+F ES DG
Sbjct: 337 TLMAYEMDRKEVRVIRNLGHDSSDPYLPYVPLFYESFADG 376
>Os07g0535100 Cyclin-like F-box domain containing protein
Length = 377
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/340 (68%), Positives = 257/340 (75%), Gaps = 16/340 (4%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
IAD EHRKKLPQTLSGFFYKS ERCP A HFTN +G+G+PL+ P+FSFLPQC VV
Sbjct: 46 IADREHRKKLPQTLSGFFYKSSSGERCPCSAHHFTNVSGKGVPLIYPSFSFLPQCDTVVP 105
Query: 61 LDSCNGLLLCRC------HVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFD 114
LD CNGLLLCRC + E F YAVCNPAT E VMLPDA+WA E R ACLCFD
Sbjct: 106 LDCCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKEWVMLPDADWANGETRIACLCFD 165
Query: 115 PAISSHFHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVD 174
PAISSHFHVL VTGV IYSS+TGLW+LHV+GW D+V + +
Sbjct: 166 PAISSHFHVLEYVEAEYED---------VTGVEIYSSETGLWTLHVSGWGDDVFLRHWAN 216
Query: 175 RTRVFLNGFLHSVT-TCDIVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPND 233
VFLNGFLHS T +I VDMEGKKWR I MP+P+GD GIIHQTQGRLCAFNVDP+D
Sbjct: 217 PRSVFLNGFLHSATCAAEIAVVDMEGKKWRTIAMPEPEGDTGIIHQTQGRLCAFNVDPDD 276
Query: 234 ILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHN 293
I +LSIW LEDYDTDNWILKHTVSS+ LFG KY+ FDYQ+IAVHPECNLIFFVYGW
Sbjct: 277 IFKLSIWILEDYDTDNWILKHTVSSLRLFGGMKYRFGFDYQIIAVHPECNLIFFVYGWDK 336
Query: 294 TLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLPDG 333
TLMAYEMDRKEVR IR LGH+S PYLPYVP+F+ESL DG
Sbjct: 337 TLMAYEMDRKEVRAIRNLGHDSFEPYLPYVPLFNESLADG 376
>Os07g0535300 Cyclin-like F-box domain containing protein
Length = 437
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/323 (71%), Positives = 251/323 (77%), Gaps = 11/323 (3%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
IADH+HRKKLPQTLSGFFY S ER HFTN TG GMPL+ PTF+FLPQC V+
Sbjct: 113 IADHDHRKKLPQTLSGFFYTSFSEERSA-AEHHFTNVTGIGMPLISPTFAFLPQCKEVIP 171
Query: 61 LDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDPAISSH 120
LDSCNGLLLCRC +F YAVCNPAT E VMLPDANWA ENR ACLCFDPAISSH
Sbjct: 172 LDSCNGLLLCRCLQFDGVSKFHYAVCNPATEEWVMLPDANWADGENRIACLCFDPAISSH 231
Query: 121 FHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVFL 180
FHV+ VTGV I SSKTGLWS+HVNGW+ V+VSL V+R VFL
Sbjct: 232 FHVVEYVEDEA---------ECVTGVEINSSKTGLWSVHVNGWNGVVLVSLSVNRRSVFL 282
Query: 181 NGFLHSVTTCD-IVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDILELSI 239
NGFLHSVT D IVAVDMEGKKWRKIP+PD D DIGIIHQTQG L AFNVD DI +LSI
Sbjct: 283 NGFLHSVTPADEIVAVDMEGKKWRKIPVPDRDNDIGIIHQTQGCLSAFNVDLLDIFKLSI 342
Query: 240 WFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVYGWHNTLMAYE 299
WFLEDYDT+NWILKHTVSS++LF K Y+LDF+YQVIAVHP+CNLIFFVYG NTLMAYE
Sbjct: 343 WFLEDYDTNNWILKHTVSSLDLFEGKNYRLDFEYQVIAVHPDCNLIFFVYGLDNTLMAYE 402
Query: 300 MDRKEVRVIRKLGHESCLPYLPY 322
MDRKEVRVIR LGH+ C PYLPY
Sbjct: 403 MDRKEVRVIRNLGHDYCWPYLPY 425
>Os05g0172100 Galactose oxidase, central domain containing protein
Length = 389
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 182/324 (56%), Gaps = 33/324 (10%)
Query: 28 PHMARHFTNATGRGMPLVCPTFSFLPQ--CHHVVILDSCNGLLLCRCHVSRETLQFQYAV 85
P +ARHF N TGRG PL+CPT SFLP+ + ++D C GLLL RC +S + +F Y V
Sbjct: 80 PKLARHFVNVTGRGRPLICPTISFLPRFDLEGMRMVDCCGGLLLFRCFMSSD--EFCYLV 137
Query: 86 CNPATGECVMLPDANWAIDENRTACLCFDPAISSHFHVLXXXXXXXXXXXXXXXXALVTG 145
CNP+T E V PD+ + + L FDPA+SSHFHV V G
Sbjct: 138 CNPSTEEWVAFPDSGYNPEWQFFTHLGFDPAVSSHFHVF---------EFVMGDCGFVEG 188
Query: 146 VVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVFLNGFLHSVTT-CDIVAVDMEGKKWRK 204
V IYSS+TGLW+ + WD E V DRTR F NG LH V I++VD+EG+ W+
Sbjct: 189 VEIYSSETGLWNFMESEWDPETTV---YDRTRTFFNGMLHLVEEGIAILSVDVEGEIWQS 245
Query: 205 IPMPDPDGD---------IGIIHQTQGRLCAFNVDPNDILELSIWFLEDYDTDNWILKHT 255
I P P+ + I Q+QG+LC + LSIW LEDY D W LKH
Sbjct: 246 IGAPRPELENVEDMFALVSCFIGQSQGKLCYLSAYDTVPWNLSIWVLEDYSKDEWTLKHK 305
Query: 256 VSSINLFGRK--KYQLDFD----YQVIAVHPECNLIFFVYGWHNTLMAYEMDRKEVRVIR 309
+++ L + K + DFD Y V+AVH ECNLI+++ G +TLM+Y+M K+ VI
Sbjct: 306 LTTEQLSEKINCKCKTDFDKAWYYHVVAVHSECNLIYYIAG-GDTLMSYDMGHKQSCVIE 364
Query: 310 KLGHESCLPYLPYVPMFSESLPDG 333
LG + YLPYVP++SE L G
Sbjct: 365 NLGPGNNSGYLPYVPLYSEILSHG 388
>Os05g0172500 Cyclin-like F-box domain containing protein
Length = 382
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 201/346 (58%), Gaps = 31/346 (8%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRG--MPLVCPTFSFLPQCHHV 58
I+D HRKKLPQTL+GFF+ S++ R P ARHF N +G G +P VCP+FSFLP+ +
Sbjct: 52 ISDPHHRKKLPQTLAGFFHLSVNESRFPVEARHFVNVSGIGGRLPHVCPSFSFLPRFERI 111
Query: 59 VILDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANW-AIDENRTACLCFDPAI 117
++DSC GLLLC+C S + F+Y V NP T E ++LP++ + D A L FDP +
Sbjct: 112 SMVDSCGGLLLCQCFESSDA--FRYVVFNPCTEEWIVLPESGFHPKDRGFCARLGFDPDV 169
Query: 118 SSHFHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTR 177
SS FHV VTGV IYSS+T W+ + W + +S D R
Sbjct: 170 SSQFHVFEFVPCDD-----------VTGVKIYSSETREWNYRESEWCTDTGIS---DICR 215
Query: 178 -VFLNGFLHSVT-TCDIVAVDMEGKKWRKIPMPDPDGDI-------GIIHQTQGRLCAFN 228
F NG LH V+ IV+VD+EG+ WR +P +G G I Q++G+L +
Sbjct: 216 SAFCNGMLHLVSYQRSIVSVDVEGRTWRTTKVPKMEGVEEVRDWLPGSICQSEGKLYYLS 275
Query: 229 VDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGR--KKYQLDFDYQVIAVHPECNLIF 286
+ LSIW LEDY D W LKH+V++ L+ + KY+ V+ VH +CNLI+
Sbjct: 276 QYNTVPISLSIWLLEDYSKDEWTLKHSVTNELLYEKINSKYKSSEFCYVVIVHLDCNLIY 335
Query: 287 FVYGWHNTLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLPD 332
++ + TLMAY+MD KE RVI+ LG + L LPYVP+++E+L +
Sbjct: 336 YITRDY-TLMAYDMDHKESRVIQALGSDCILECLPYVPLYAETLSN 380
>Os05g0175960 Cyclin-like F-box domain containing protein
Length = 381
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 191/346 (55%), Gaps = 29/346 (8%)
Query: 1 IADHEHRKKLPQ-----TLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQC 55
I+D +HR+ LP+ + GFF R F + +GRG V P+ FLP C
Sbjct: 49 ISDPDHRRLLPRYHLHDAVVGFFDH-----------RSFISFSGRGR-FVGPSLPFLPDC 96
Query: 56 HHVVILDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDP 115
+ +LD CNGLLLCR + +F Y V NPAT + ++LP++ W E + A L FDP
Sbjct: 97 GDLRLLDICNGLLLCRRRRLSDPRRFDYLVANPATEQWIVLPESGWTHKE-QIARLGFDP 155
Query: 116 AISS-HFHVLXXXXXXXXXXXXXXX-XALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPV 173
A+SS HFHV V V IYSS+TG+W NGW ++ +L +
Sbjct: 156 AVSSSHFHVFEFELVEHSAMGMSGDHDGNVVAVEIYSSETGVWIHRNNGWG-CIIRTLDI 214
Query: 174 DRTRVFLNGFLHSVT-TCDIVAVDMEGKKWRKIPMP----DP--DGDIGIIHQTQGRLCA 226
R+ VF G LH +T + VD+EG WR IPMP DP D G I +Q LC
Sbjct: 215 WRS-VFFKGMLHLITMDDVVAVVDVEGNSWRTIPMPETFVDPYYGVDDGFIDVSQDCLCF 273
Query: 227 FNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIF 286
N D +D+ +LS+W LEDY +D W LKHTVS ++LFG K +D +V+++HP+ N+IF
Sbjct: 274 VNTDRDDLYKLSVWVLEDYSSDQWTLKHTVSHLHLFGTDKQHFGYDDKVVSIHPKRNIIF 333
Query: 287 FVYGWHNTLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLPD 332
V ++YEMD +EV I +LG YLPYVP++SESL +
Sbjct: 334 LVSLNDGIFISYEMDSREVHYICELGDILTRHYLPYVPLYSESLAN 379
>Os05g0177400 Cyclin-like F-box domain containing protein
Length = 351
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 151/285 (52%), Gaps = 30/285 (10%)
Query: 3 DHEH---RKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVV 59
DH H R L + GFFY FTN TG G P V P+ FLP+C +
Sbjct: 56 DHRHLLPRYHLGDAIVGFFYSDT-----------FTNVTGEGRPFVDPSLPFLPKCEFLN 104
Query: 60 ILDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDPAI-S 118
+LDSCNGLLLCRC + +F Y V NPAT + V+LPD+ W+ D+ +TA L FDP + S
Sbjct: 105 VLDSCNGLLLCRCWRLADPRRFDYLVVNPATEQWVILPDSGWS-DKVQTARLGFDPVVSS 163
Query: 119 SHFHVLXXXXXXXXXXXXXXXXAL-----VTGVVIYSSKTGLWSLHVNGWDDEVMVSLPV 173
SHFHV V GV IYSS TG WS NGWD E+ +
Sbjct: 164 SHFHVFEFVEDGAGDADGNVDDDDDFDGHVKGVEIYSSVTGEWSHKDNGWDWEIRIR--D 221
Query: 174 DRTRVFLNGFLHSVTTCDIV-AVDMEGKKWRKIPMPDP-----DG-DIGIIHQTQGRLCA 226
+ VF +G LH +T +V AVD+EG WR IPMP DG G I +QG L
Sbjct: 222 EWNSVFFDGVLHLITLEYVVAAVDVEGNAWRTIPMPQSLVEPFDGIGEGFIGLSQGSLYF 281
Query: 227 FNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDF 271
N D ++ ++S+W LEDY ++ WI KHTVS ++LF K+ F
Sbjct: 282 VNTDHDEPYKVSVWVLEDYSSEQWIWKHTVSHLHLFRTKRLLFVF 326
>Os05g0139200 Cyclin-like F-box domain containing protein
Length = 399
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 187/352 (53%), Gaps = 30/352 (8%)
Query: 1 IADHEHRKKLPQTLSGFF-YKSIDYERCPHMARHFTNATGRGMPLVC------PTFSFLP 53
I+ +HRKKLP TL+GF + S+ + HF + G P+ SFLP
Sbjct: 56 ISHRDHRKKLPHTLAGFISHYSVPLHDGIVLIPHFDSIDGGEEDEEEHRLVPDPSLSFLP 115
Query: 54 QCHHVVILDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCF 113
+ D CNGLLLC C + + Y VCNPAT ++LP+ + A D T L F
Sbjct: 116 GYRTIFPKDCCNGLLLCLCCKNSPRDESDYVVCNPATQRWIILPEIDRA-DPVSTVRLGF 174
Query: 114 DPAISSHFHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPV 173
DPA+S +FHV V+GV I+S +TG WS NGW DE ++
Sbjct: 175 DPALSPYFHVFAILEHVD---------GCVSGVEIFSLETGAWSHRENGWGDEDDHTVHP 225
Query: 174 DRTRVFLNGFLHSVT-TCDIVAVDMEGKKWRKIPMPD-------PDGDIGIIHQTQGRLC 225
D F++G ++ ++ I+AVD EGKKW+ IP + +G + I Q+QG L
Sbjct: 226 DAKSAFVDGMVNFISYNSAIIAVDTEGKKWKTIPFLEEMTCECISNGILAFIGQSQGHLY 285
Query: 226 AFNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLI 285
N D LS+W L+DY + W K+ +S+ LFG +L+ +Y +IA+HPECN+I
Sbjct: 286 YINFRDWDSSILSVWTLDDYCSCGWSFKYNISTSQLFGWTNMKLEREYSLIAIHPECNMI 345
Query: 286 FFVY--GWHNTLMAYEMDRKEVRVI---RKLGHESCLPYLPYVPMFSESLPD 332
F+V+ NTL++Y+MDR +V I R ++ P LPYVP+F ESLPD
Sbjct: 346 FYVFRDEGQNTLLSYDMDRGKVNSICNMRDPFWKTWDPCLPYVPVFMESLPD 397
>Os05g0177000 Cyclin-like F-box domain containing protein
Length = 424
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 179/362 (49%), Gaps = 36/362 (9%)
Query: 1 IADHEHRKKLP----QTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCH 56
I+ +HR++LP Q L+GF Y DY + R PL+ P+FSFLP+C
Sbjct: 69 ISHPDHRRQLPRHHLQPLAGFLYA--DYRV---LNRFQIVPALDPPPLIDPSFSFLPKCD 123
Query: 57 HVVILDSCNGLLLCRC-HVSRETLQFQYAVCNPATGECVMLPDANWAIDENRTACLCFDP 115
+ ++DSCNGLLLCRC + E F Y VC+P + V+ PD+ + + L FDP
Sbjct: 124 DLQLVDSCNGLLLCRCWNQLNEHRTFNYVVCSPTAKKFVVFPDSTCS--KKVRPFLGFDP 181
Query: 116 AISSHFHVLXXXXXXXXXXXXXXXXAL-----VTGVVIYSSKTGLWSLHV-NGWDDEVMV 169
A+SSHFHV V G+ IYSS+TG+WS + NGW + + +
Sbjct: 182 AVSSHFHVFEVVEDWDYYDCDDDDLECDGVEDVVGLRIYSSETGVWSDEIDNGWSNRIRI 241
Query: 170 SLPVD--RTRVFLNGFLHSVTTCDIVA-VDMEGKKWRKIPMPDPDGDI------------ 214
VF NG LH V +VA VD+EGK WR IP+ DG
Sbjct: 242 RRDQKGGSKSVFFNGMLHLVAIQPVVAVVDVEGKNWRTIPLAHKDGSPLCGAHPPCASGP 301
Query: 215 -GIIHQTQGRLCAFNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRK-KYQLDFD 272
G I ++ L + D E+S+W L+DY W L+HTVS++ F R + +++ D
Sbjct: 302 EGFIALSRDLLHFASTDSYGDWEISVWVLDDYYGGQWTLQHTVSTMRPFERTMRRRMNPD 361
Query: 273 YQVIAVHPECNLIFFVYGW-HNTLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLP 331
+ + F Y + H L +YEMD EVR + + PYLPY+P+F ESL
Sbjct: 362 DCTLVWIEGRKMFFMFYDYVHCILTSYEMDSGEVRCLSRPRSYCEPPYLPYIPLFLESLA 421
Query: 332 DG 333
DG
Sbjct: 422 DG 423
>Os05g0172400
Length = 282
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 84/128 (65%), Gaps = 6/128 (4%)
Query: 1 IADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFLPQCHHVVI 60
I+D +HRKKLPQTL+GFFY S + R P ARHF N +GRG PLV P+FSFLP+ + +
Sbjct: 40 ISDPDHRKKLPQTLAGFFYHSENESRFPMEARHFVNVSGRGRPLVYPSFSFLPRFESIRM 99
Query: 61 LDSCNGLLLCRCHVSRETLQFQYAVCNPATGECVMLP----DANWAIDENRTACLCFDPA 116
+DSC GLLLCRC S + +Y VCNPAT E V LP DA +E A L FDP
Sbjct: 100 VDSCGGLLLCRCFESSDAS--RYVVCNPATEELVALPESSYDAEGGGEEEMCARLGFDPD 157
Query: 117 ISSHFHVL 124
+SS FHV
Sbjct: 158 VSSQFHVF 165
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 236 ELSIWFLEDYDTDNWILKHTVSSINLFGRK--KYQLDFDYQVIAVHPECNLIFFVYGWHN 293
E I LEDY D W LKH V+ L G+ KYQ F Y+ +AVH +CNL++++ +
Sbjct: 185 ENGITVLEDYSKDEWTLKHKVTIELLSGKISCKYQTMF-YRGVAVHLDCNLVYYIADY-- 241
Query: 294 TLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMFSESLPDG 333
LM+Y+MDRKE RVI+ LG + + YLPYVP+++++L G
Sbjct: 242 ILMSYDMDRKEPRVIQDLGSDCMMEYLPYVPLYAKTLSSG 281
>Os05g0177100 Conserved hypothetical protein
Length = 135
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 215 GIIHQTQGRLCAFNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQ 274
G I +QG L N D + ++S+W LEDY ++ WI KHTVS ++LF K+ DY+
Sbjct: 15 GFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLFGHDYK 74
Query: 275 VIAVHPECNLIFFVYGWHNTLMAYEMDRKEVRVIRKLGH-ESCLPYLPYVPMFSESLPDG 333
V+++HPE N IF V+ LM+YE+D +EV I +G E + YLPYVP++ ESL DG
Sbjct: 75 VVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIGGCEWVMYYLPYVPLYLESLADG 134
>Os05g0175920
Length = 93
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 192 IVAVDMEGKKWRKIPMP----DPDGDI--GIIHQTQGRLCAFNVDPNDILE-LSIWFLED 244
+ VD+EG WR IPMP DPD ++ G + +QGRL N D D+ LS+W L+D
Sbjct: 5 VAVVDVEGNSWRTIPMPQTLDDPDCNVDDGFVDLSQGRLYFVNTDRYDLYNSLSVWVLQD 64
Query: 245 YDTDNWILKHTVSSINLFGRKKYQLDFDY 273
Y +D W LKHTVS ++LFGR++ DY
Sbjct: 65 YSSDQWTLKHTVSHLHLFGRRRKDFGHDY 93
>Os01g0380800 Cyclin-like F-box domain containing protein
Length = 391
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 147/347 (42%), Gaps = 51/347 (14%)
Query: 9 KLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCP-------TFSFLPQCHHVVIL 61
KLP+ L+GF Y+ D ++ + +CP + SFLP+ + +
Sbjct: 53 KLPKPLTGFLYQKSD-------------SSAIEVASLCPDDRSFDTSLSFLPRYEWLELT 99
Query: 62 DSCNGLLLCRCHVSRETLQF-QYAVCNPATGECVMLPDANWAIDENRTAC-LCFDPAISS 119
DSCNGL+LC+ + + + VCNPAT + + LP+ + + A L FDP+ S
Sbjct: 100 DSCNGLVLCKYGRNTSSPSVANFVVCNPATRQWMELPETLLEPEGHSYATKLAFDPSWSP 159
Query: 120 HFHVLXXXXXXXXXXXXXXXXALVTGVVIYSSKTGLWSLHVNGWDDEVMVSLPVDRTRVF 179
+F+V A ++ V I+SS+ W + + W+ +S+ + V
Sbjct: 160 YFYVF----NFEEKRNPVERWACISKVAIFSSRNSTWFMD-DKWEPSNQISVDC-QPHVL 213
Query: 180 LNGFLH-SVTTCDIVAVDM-----EGKKW------RKIPMPDPDGDIGIIHQTQGRLCAF 227
L G L ++C ++ +D + W K P D G + G L
Sbjct: 214 LGGKLFLQTSSCRVLVIDAFHNTEQPSHWIFDLPGYKPTSPMVDCLTGYLGHKSGVLHYV 273
Query: 228 NVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLD--FD------YQVIAVH 279
D L +W + Y +W LKH +S + FG+ + LD FD Y + ++
Sbjct: 274 QPDTGG-RTLLVWARDGYPHGDWNLKHRLSMSDAFGQDIF-LDEHFDGFLSCHYDIQSLD 331
Query: 280 PECNLIFFVYGWHNTLMAYEMDRKEVRVIRKLGHESCLPYLPYVPMF 326
E L+F + L++Y + ++ IR G L Y+P MF
Sbjct: 332 LERGLVFLCHFAAERLLSYSLSTGKLTKIRD-GLRRYLYYVPNCSMF 377
>Os05g0139300 Cyclin-like F-box domain containing protein
Length = 309
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 249 NWILKHTVSSINLFGRKKYQLDFDYQVIAVHPECNLIFFVY--GWHNTLMAYEMDRKEVR 306
W K+ +S+ LFG +L+ Y +IA+HP+CN+IF+V NTL++Y+MDR E+
Sbjct: 219 QWSFKYNISTSQLFGWTNMRLERKYNLIAIHPDCNMIFYVSRDEGQNTLLSYDMDRGEIN 278
Query: 307 VIRKLGHESCLPY---LPYVPMFSESLPD 332
I + P+ LPYVP+F ESLPD
Sbjct: 279 SICNIRDPFWNPWDPCLPYVPVFMESLPD 307
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,075,878
Number of extensions: 498984
Number of successful extensions: 1483
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1425
Number of HSP's successfully gapped: 17
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)