Os07g0535100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0535100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.07 | 0.488 | 5.84 | 1.95 | 1 | 1.28 | 0.0756 | 1.29 | 0.615 | 0.912 | 21.2 | 1598 | -- | -- |
| 110.9 | 0.49 | 5.88 | 1.65 | 0.954 | 1.16 | 0.0995 | -- | 0.55 | 0.848 | 21.4 | 1349 | -- | -- |
| 107.42 | 0.483 | 5.84 | 2.01 | 0.969 | 1.29 | -- | 1.42 | 0.625 | 0.83 | 21.2 | 1403 | -- | -- |
| 110.93 | 0.491 | 5.88 | 1.66 | 0.943 | 1.16 | -- | -- | 0.545 | 0.848 | 21.38 | 1345 | -- | -- |
| 156.98 | 0.584 | 5.85 | 1.89 | -- | 1.32 | -- | 0.825 | 0.577 | -- | 21.33 | 1012 | -- | -- |
| 148.74 | 0.572 | 5.81 | 2.14 | 1 | -- | -0.00146 | -- | 0.865 | 0.909 | -- | -- | -- | -- |
| 148.74 | 0.571 | 5.81 | 2.14 | 1 | -- | -- | -- | 0.865 | 0.909 | -- | -- | -- | -- |
| 158.74 | 0.587 | 5.87 | 1.68 | -- | 1.26 | -- | -- | 0.533 | -- | 21.3 | 1004 | -- | -- |
| 133.87 | 0.539 | 5.96 | -- | 0.972 | 1.91 | -- | -- | 0.198 | 0.905 | 17.9 | 47520 | -- | -- |
| 211.63 | 0.68 | 5.79 | 2.18 | -- | -- | -- | -- | 0.884 | -- | -- | -- | -- | -- |
| 269.21 | 0.768 | 5.86 | -- | 1.04 | -- | -- | -- | 0.626 | 0.999 | -- | -- | -- | -- |
| 193.37 | 0.648 | 5.95 | -- | -- | 1.97 | -- | -- | 0.203 | -- | 18 | 47520 | -- | -- |
| 336.45 | 0.856 | 5.85 | -- | -- | -- | -- | -- | 0.642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 51 | 108.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 127 | 109.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 138 | 109.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 154 | 109.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 179 | 110.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 188 | 110.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 328 | 110.74 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 361 | 110.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 363 | 110.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 395 | 111.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 397 | 111.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 447 | 111.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 453 | 111.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 498 | 111.61 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 512 | 111.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 579 | 111.91 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 619 | 112.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 703 | 112.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 714 | 112.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 746 | 112.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 761 | 112.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 788 | 112.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 798 | 112.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 802 | 112.66 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 845 | 112.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 926 | 113.05 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 978 | 113.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 983 | 113.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 985 | 113.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 991 | 113.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |