Os05g0172100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0172100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Galactose oxidase, central domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.39 | 0.309 | 8.28 | 0.321 | 0.666 | 0.64 | -0.539 | 0.888 | 0.194 | 11.4 | 9.383 | 406 | -- | -- |
| 43.93 | 0.309 | 8.29 | 0.175 | 0.654 | 0.675 | -0.558 | -- | 0.153 | 11.3 | 6.219 | 377 | -- | -- |
| 44.46 | 0.311 | 8.27 | 0.354 | 0.708 | 0.607 | -- | 1.17 | 0.211 | 11.5 | 10.17 | 526 | -- | -- |
| 45.25 | 0.313 | 8.29 | 0.158 | 0.662 | 0.659 | -- | -- | 0.156 | 11.4 | 6.246 | 397 | -- | -- |
| 61.5 | 0.365 | 8.32 | 0.0732 | -- | 1.08 | -- | -0.039 | 0.0919 | -- | 1.224 | 10 | -- | -- |
| 49.04 | 0.328 | 8.28 | 0.318 | 0.669 | -- | -0.48 | -- | 0.252 | 12.3 | -- | -- | -- | -- |
| 50.02 | 0.331 | 8.28 | 0.3 | 0.671 | -- | -- | -- | 0.25 | 12.4 | -- | -- | -- | -- |
| 61.5 | 0.365 | 8.32 | 0.0788 | -- | 1.08 | -- | -- | 0.0937 | -- | 4.087 | 10 | -- | -- |
| 45.82 | 0.315 | 8.3 | -- | 0.67 | 0.731 | -- | -- | 0.128 | 11.3 | 6.656 | 407 | -- | -- |
| 78.29 | 0.413 | 8.29 | 0.277 | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
| 52.4 | 0.339 | 8.28 | -- | 0.667 | -- | -- | -- | 0.217 | 12.4 | -- | -- | -- | -- |
| 61.65 | 0.366 | 8.33 | -- | -- | 1.11 | -- | -- | 0.082 | -- | -4.686 | 10 | -- | -- |
| 80.32 | 0.418 | 8.3 | -- | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 3 | 40.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 5 |
| 6 | 40.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 24 | 40.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 56 | 41.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 60 | 41.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 70 | 41.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 115 | 41.59 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 19 |
| 134 | 41.70 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 10 |
| 136 | 41.70 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 20 |
| 152 | 41.75 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 12 |
| 200 | 41.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 229 | 42.01 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 14 |
| 270 | 42.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 306 | 42.22 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 9 |
| 328 | 42.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 16 |
| 350 | 42.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 363 | 42.37 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 10 |
| 374 | 42.40 | temperature | 25 | 720 | < th | dose independent | sin | 9 | NA |
| 393 | 42.44 | radiation | 10 | 270 | < th | dose independent | rect. | 21 | 10 |
| 405 | 42.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 433 | 42.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 438 | 42.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 514 | 42.64 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 515 | 42.64 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 14 |
| 558 | 42.71 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 578 | 42.74 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 14 |
| 579 | 42.74 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 615 | 42.79 | radiation | 20 | 270 | < th | dose independent | rect. | 16 | 10 |
| 617 | 42.80 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 628 | 42.81 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 641 | 42.83 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 646 | 42.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 678 | 42.87 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 1 |
| 700 | 42.90 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 7 |
| 711 | 42.91 | wind | 7 | 270 | < th | dose independent | rect. | 2 | 14 |
| 755 | 42.96 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 20 |
| 760 | 42.96 | wind | 9 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 791 | 42.99 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 849 | 43.05 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 6 |
| 861 | 43.06 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 6 |
| 878 | 43.08 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 7 |
| 879 | 43.08 | radiation | 40 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 930 | 43.14 | atmosphere | 995 | 270 | > th | dose independent | rect. | 16 | 10 |
| 933 | 43.14 | wind | 9 | 270 | < th | dose independent | rect. | 10 | 23 |
| 965 | 43.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 21 |