BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0172100 Os05g0172100|AK068467
         (389 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07610.1  | chr5:2406068-2407330 FORWARD LENGTH=421             57   2e-08

>AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421
          Length = 420

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 18/225 (8%)

Query: 112 MRMVDCCGGLLLFRCF-MSSDEFC--YLVCNPSTEEWVAFPDSGYNPEWQFFTHLGFDPA 168
           M ++    GLLL +C   SS+ F   Y V NP+T+++       +         L FDP+
Sbjct: 124 MIIMQSTNGLLLCKCSCASSNHFNTNYYVYNPTTKQYTLL----HQIAGHIALSLAFDPS 179

Query: 169 VSSHFHVF--------EFVMGDCGFVEGVEIYSSETGLW-NFMESEWDPETTVYDRTRTF 219
            S H+ VF         F       +  +E+YSS  GLW   +     P T +      F
Sbjct: 180 RSPHYKVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVF 239

Query: 220 FNGMLHLVE-EGIAILSVDVEGEIWQSIGAPRPELENVEDMFALVSCFIGQSQGKLCYLS 278
           +NG ++         LS D+  +  + +  P  E E+       +  F+ +SQG L Y+ 
Sbjct: 240 WNGAVNWYGFSSRDCLSFDINTQEIKILPLPDHEHEDEPLPDPRILMFLDESQGNLYYIE 299

Query: 279 AYDTVPWNLSIWVLEDYSKDEWTLKHKLTTEQLSEKINCKCKTDF 323
             +    NL ++ +E  S   W++K+ +  E L+       +T++
Sbjct: 300 VNNQSSSNLRVYEMESNSS-SWSVKYNVDLEPLAAAFPEMIRTEY 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,771,344
Number of extensions: 374196
Number of successful extensions: 999
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)