Os07g0535700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os07g0535700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.15 | 0.71 | 4.64 | 0.41 | 0.475 | -2.12 | 0.204 | -1.82 | -0.908 | 16.4 | 23.19 | 2000 | -- | -- |
| 233.03 | 0.711 | 4.71 | -0.316 | 0.558 | -2.21 | 0.33 | -- | -1.13 | 15.5 | 23.66 | 2172 | -- | -- |
| 227.29 | 0.702 | 4.65 | 0.426 | 0.543 | -2.14 | -- | -1.91 | -0.925 | 15.9 | 23.17 | 2220 | -- | -- |
| 233.34 | 0.711 | 4.71 | -0.312 | 0.561 | -2.2 | -- | -- | -1.12 | 15.4 | 23.65 | 2176 | -- | -- |
| 240.47 | 0.722 | 4.64 | 0.375 | -- | -2.1 | -- | -1.72 | -0.919 | -- | 23.1 | 2009 | -- | -- |
| 428.6 | 0.971 | 4.51 | 0.625 | 0.487 | -- | 0.193 | -- | -0.174 | 17.6 | -- | -- | -- | -- |
| 428.69 | 0.97 | 4.51 | 0.624 | 0.488 | -- | -- | -- | -0.173 | 17.6 | -- | -- | -- | -- |
| 246.24 | 0.731 | 4.71 | -0.292 | -- | -2.16 | -- | -- | -1.12 | -- | 23.3 | 1974 | -- | -- |
| 235.63 | 0.715 | 4.7 | -- | 0.557 | -2.12 | -- | -- | -1.06 | 15.5 | 23.63 | 2168 | -- | -- |
| 441.04 | 0.981 | 4.5 | 0.608 | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
| 438.95 | 0.98 | 4.52 | -- | 0.478 | -- | -- | -- | -0.242 | 17.7 | -- | -- | -- | -- |
| 248.24 | 0.734 | 4.7 | -- | -- | -2.1 | -- | -- | -1.06 | -- | 23.29 | 1970 | -- | -- |
| 450.8 | 0.991 | 4.51 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 2 | 222.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 3 | 222.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 12 | 223.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 22 | 223.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 83 | 227.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 129 | 229.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 140 | 229.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 210 | 231.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 284 | 232.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 384 | 233.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 545 | 235.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 587 | 235.85 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 655 | 236.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 656 | 236.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 659 | 236.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 675 | 236.92 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 711 | 237.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |