Os05g0172500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0172500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.44	(0.0319)	R²	:	0.774
β₁	:	0.858	(0.117)	R²_dD	:	0.0276	R²_D	:	0.0319
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.86	(0.105)	R²_dE	:	0.678	R²_E	:	0.711
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.563	(0.0682)	R²_dN8	:	0.0474	R²_N8	:	0.0437
σ	:	0.596
deviance	:	163.66
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	2.084
memory length	:	417
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	5.6
open length of G	:	19.5

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
154.98	0.585	5.44	1.01	1.4	2.67	0.07	0.891	0.632	19	8.856	271	6.12	21
155.41	0.581	5.46	0.961	1.35	2.71	0.325	--	0.606	18.9	7.898	280	6.07	20.9
154.79	0.579	5.44	1.03	1.35	2.7	--	1.08	0.646	19	8.453	274	6.16	20.9
155.73	0.581	5.45	0.941	1.36	2.67	--	--	0.624	19	9.099	270	6.3	20.7
174.65	0.616	5.45	0.795	--	3.79	--	1.64	0.512	--	4.258	377	5.96	20.3
230.44	0.712	5.43	1.39	2.82	--	0.926	--	0.834	18.3	--	--	--	--
232.56	0.714	5.43	1.38	2.82	--	--	--	0.837	18.3	--	--	--	--
163.66	0.596	5.44	0.858	--	3.86	--	--	0.563	--	2.084	417	5.6	19.5
176.43	0.619	5.47	--	1.15	3.07	--	--	0.498	19.1	9.218	277	6.27	20.8
646.46	1.19	5.38	1.31	--	--	--	--	0.776	--	--	--	--	--
282.97	0.787	5.47	--	2.81	--	--	--	0.683	18.3	--	--	--	--
180.47	0.626	5.45	--	--	3.96	--	--	0.485	--	6.845	404	6.09	18.7
691.53	1.23	5.41	--	--	--	--	--	0.631	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	155.41	temperature	10	270	> th	dose dependent	rect.	6	21
8	160.81	temperature	30	270	< th	dose dependent	rect.	1	20
15	161.58	temperature	15	10	> th	dose dependent	rect.	8	21
19	163.11	temperature	30	90	< th	dose dependent	rect.	3	20
66	168.49	temperature	15	270	> th	dose dependent	rect.	18	22
70	169.24	temperature	30	10	< th	dose dependent	rect.	5	17
126	172.51	temperature	15	270	> th	dose dependent	rect.	22	15
127	172.53	temperature	15	270	> th	dose dependent	rect.	21	17
134	172.80	temperature	30	90	< th	dose dependent	rect.	3	23
170	174.25	temperature	30	90	< th	dose dependent	rect.	11	23
192	175.14	temperature	30	90	< th	dose dependent	rect.	15	20
193	175.23	temperature	30	270	< th	dose dependent	rect.	13	21
200	175.52	temperature	30	90	< th	dose dependent	rect.	15	22
215	176.07	temperature	30	270	< th	dose dependent	rect.	9	23
224	176.32	temperature	30	90	< th	dose dependent	no	NA	NA
248	176.98	temperature	15	90	> th	dose dependent	rect.	21	23
263	177.34	temperature	10	90	> th	dose dependent	no	NA	NA
269	177.51	temperature	30	10	< th	dose dependent	rect.	1	23
337	178.99	temperature	30	30	< th	dose dependent	rect.	9	23
346	179.24	temperature	25	270	< th	dose independent	rect.	2	20
368	179.71	temperature	15	10	> th	dose dependent	rect.	21	23
407	180.38	temperature	10	270	> th	dose dependent	sin	7	NA
410	180.39	temperature	30	30	< th	dose dependent	rect.	19	23
497	181.59	temperature	10	270	> th	dose dependent	rect.	7	9
537	182.19	temperature	30	270	< th	dose dependent	sin	7	NA
575	182.66	temperature	10	90	> th	dose dependent	sin	3	NA
605	183.16	temperature	25	4320	< th	dose dependent	rect.	21	1
668	184.04	temperature	30	270	< th	dose dependent	rect.	2	9
699	184.35	temperature	30	90	< th	dose dependent	sin	1	NA
734	184.68	temperature	25	270	> th	dose independent	rect.	7	20
775	185.10	temperature	20	4320	< th	dose independent	rect.	18	8
831	185.43	temperature	15	10	> th	dose dependent	rect.	23	17
834	185.46	temperature	20	4320	< th	dose independent	rect.	13	13
846	185.50	temperature	10	4320	> th	dose dependent	rect.	21	4
882	185.68	temperature	10	4320	> th	dose dependent	rect.	21	2
886	185.71	temperature	20	4320	> th	dose independent	rect.	18	8
921	185.88	temperature	25	270	< th	dose independent	rect.	15	20
937	185.94	temperature	20	270	> th	dose independent	rect.	21	17
939	185.94	temperature	10	4320	> th	dose dependent	rect.	24	1
952	186.00	temperature	20	4320	> th	dose independent	rect.	13	13
955	186.01	temperature	20	4320	> th	dose independent	rect.	15	11