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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0139300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0374) R2 : 0.375
β1 : 1.44 (0.137) R2dD : 0.157 R2D : 0.135
β2 : 1.25 (0.097) R2dC : 0.229 R2C : 0.218
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.243 (0.0798) R2dN8 : 0.0171 R2N8 : -0.00768
σ : 0.703
deviance : 225.3
__
_____
C
peak time of C : 19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.48 0.659 3.75 2.4 1.41 -0.82 0.867 5.06 0.558 18.8 10.77 352 -- --
209.67 0.674 3.84 1.78 1.22 -0.664 1.74 -- 0.372 19 7.884 4282 -- --
197.92 0.655 3.74 2.5 1.41 -0.815 -- 5.66 0.589 18.8 5.334 392 -- --
217.16 0.686 3.83 1.76 1.25 -0.702 -- -- 0.388 19.1 10.11 5444 -- --
276.78 0.775 3.74 2.25 -- 0.472 -- 6 0.396 -- 2.616 375 -- --
217.76 0.692 3.87 1.47 1.24 -- 1.71 -- 0.239 18.9 -- -- -- --
225.3 0.703 3.87 1.44 1.25 -- -- -- 0.243 19 -- -- -- --
283.89 0.785 3.85 1.26 -- 0.897 -- -- 0.154 -- 24.9 443 -- --
254.51 0.743 3.96 -- 1.24 0.811 -- -- -0.159 18.9 -68.91 47520 -- --
307.26 0.819 3.84 1.41 -- -- -- -- 0.22 -- -- -- -- --
279.88 0.783 3.9 -- 1.23 -- -- -- 0.083 19 -- -- -- --
324.77 0.839 3.89 -- -- 1.09 -- -- -0.00133 -- 24.7 498 -- --
359.97 0.886 3.88 -- -- -- -- -- 0.0633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.37 radiation 40 4320 < th dose independent rect. 24 9
3 193.45 radiation 40 4320 < th dose independent rect. 4 5
5 193.46 radiation 40 4320 < th dose independent rect. 7 2
8 193.51 radiation 40 4320 < th dose independent rect. 19 14
12 193.57 radiation 40 4320 < th dose independent rect. 17 16
18 194.42 wind 7 43200 > th dose dependent rect. 18 2
19 194.52 radiation 20 14400 < th dose dependent rect. 24 5
20 194.91 humidity 90 14400 > th dose independent rect. 4 3
21 195.09 wind 7 43200 > th dose independent rect. 18 2
24 195.35 temperature 10 270 > th dose dependent rect. 8 23
26 195.38 wind 7 43200 < th dose independent rect. 18 2
27 195.45 radiation 40 4320 > th dose dependent rect. 8 1
29 195.53 radiation 10 4320 < th dose independent rect. 24 5
51 195.73 humidity 90 14400 < th dose independent rect. 23 8
52 195.75 radiation 1 4320 > th dose independent rect. 4 1
62 195.75 radiation 1 4320 > th dose dependent rect. 4 1
75 195.87 radiation 10 14400 < th dose dependent rect. 19 10
78 195.95 humidity 90 14400 > th dose dependent rect. 5 1
79 196.00 radiation 10 4320 < th dose independent rect. 19 11
81 196.06 wind 9 43200 > th dose independent rect. 16 16
88 196.16 humidity 90 14400 < th dose independent rect. 23 2
89 196.18 humidity 90 14400 > th dose dependent rect. 1 11
91 196.23 temperature 25 270 < th dose dependent rect. 5 18
99 196.32 radiation 10 4320 < th dose independent rect. 4 2
104 196.35 wind 7 43200 > th dose dependent rect. 16 16
105 196.35 temperature 30 270 < th dose dependent rect. 4 22
107 196.36 wind 9 43200 > th dose dependent rect. 13 19
113 196.40 humidity 80 43200 < th dose dependent rect. 6 6
124 196.45 temperature 25 270 < th dose dependent rect. 1 22
126 196.47 humidity 90 14400 > th dose independent rect. 1 7
127 196.47 wind 9 43200 < th dose independent rect. 16 16
132 196.50 humidity 90 14400 > th dose independent rect. 5 1
134 196.50 humidity 80 43200 < th dose dependent rect. 11 1
138 196.51 humidity 70 43200 > th dose independent rect. 3 9
139 196.51 wind 7 43200 > th dose independent rect. 17 10
144 196.53 humidity 90 14400 < th dose independent rect. 2 5
151 196.53 temperature 15 270 > th dose dependent rect. 15 23
152 196.54 wind 9 43200 > th dose independent rect. 14 19
155 196.56 wind 7 43200 > th dose dependent rect. 16 11
157 196.57 wind 9 43200 > th dose dependent sin 17 NA
159 196.58 wind 7 43200 < th dose independent rect. 17 10
169 196.61 humidity 70 43200 < th dose independent rect. 3 9
175 196.62 wind 9 43200 < th dose independent rect. 14 19
176 196.62 humidity 90 14400 > th dose dependent rect. 4 3
188 196.64 radiation 40 4320 > th dose independent rect. 8 1
222 196.68 humidity 80 14400 > th dose dependent rect. 23 8
225 196.69 wind 9 43200 > th dose independent rect. 13 21
238 196.71 wind 9 43200 > th dose dependent sin 14 NA
264 196.76 wind 7 43200 < th dose independent rect. 18 6
290 196.82 wind 9 43200 > th dose independent sin 13 NA
293 196.83 humidity 80 14400 > th dose dependent rect. 2 5
390 197.03 humidity 70 43200 > th dose independent sin 6 NA
394 197.03 wind 9 43200 > th dose dependent rect. 18 6
397 197.04 radiation 20 14400 > th dose independent rect. 6 1
420 197.05 wind 9 43200 > th dose independent rect. 6 18
424 197.06 wind 9 43200 < th dose independent sin 13 NA
425 197.06 humidity 70 43200 < th dose independent sin 6 NA
427 197.06 wind 9 43200 > th dose independent rect. 6 15
448 197.08 humidity 90 14400 > th dose dependent sin 5 NA
458 197.09 humidity 80 43200 < th dose dependent sin 5 NA
480 197.11 temperature 30 270 < th dose dependent rect. 22 23
541 197.18 wind 9 43200 < th dose independent rect. 6 15
542 197.18 wind 9 43200 < th dose independent rect. 6 18
573 197.22 radiation 40 43200 < th dose independent rect. 8 1
585 197.22 wind 9 43200 > th dose independent rect. 20 23
601 197.24 humidity 90 14400 < th dose independent rect. 5 2
633 197.26 wind 9 43200 > th dose independent rect. 23 22
659 197.28 wind 9 43200 > th dose independent no NA NA
696 197.31 wind 9 43200 > th dose independent rect. 16 23
711 197.32 wind 7 43200 > th dose dependent rect. 6 18
727 197.34 wind 9 43200 < th dose independent rect. 23 22
729 197.34 wind 9 43200 < th dose independent rect. 20 23
745 197.35 temperature 30 270 < th dose dependent rect. 20 23
767 197.37 temperature 25 270 < th dose dependent sin 21 NA
816 197.41 wind 9 43200 < th dose independent no NA NA
829 197.41 wind 9 43200 > th dose dependent rect. 10 13
852 197.43 wind 9 43200 < th dose independent rect. 16 23
952 197.50 wind 9 43200 > th dose dependent rect. 10 11
961 197.51 temperature 10 270 > th dose dependent no NA NA