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Os05g0139200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0348) R2 : 0.64
β1 : 2.33 (0.127) R2dD : 0.275 R2D : 0.244
β2 : 2.32 (0.107) R2dC : 0.565 R2C : 0.135
β3 : -1.25 (0.0897) R2dE : 0.231 R2E : -0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.399 (0.074) R2dN8 : 0.0307 R2N8 : -0.0142
σ : 0.649
deviance : 193.98
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_____
C
peak time of C : 20.6
E
wheather : radiation
threshold : 22.63
memory length : 7
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.88 0.654 6.06 2.32 2.3 -1.24 -0.173 -0.0508 0.399 20.5 23.5 8 -- --
193.83 0.648 6.06 2.32 2.32 -1.25 -0.215 -- 0.402 20.6 22.62 7 -- --
193.89 0.649 6.06 2.32 2.31 -1.24 -- -0.137 0.398 20.5 22.87 7 -- --
193.98 0.649 6.06 2.33 2.32 -1.25 -- -- 0.399 20.6 22.63 7 -- --
391.43 0.921 6 2.3 -- -0.299 -- -0.57 0.37 -- 50.34 7 -- --
222.35 0.699 6.04 2.36 1.83 -- -0.266 -- 0.409 18.4 -- -- -- --
222.53 0.699 6.04 2.37 1.83 -- -- -- 0.408 18.4 -- -- -- --
252.28 0.74 5.89 1.82 -- -1.86 -- -- 0.232 -- 2.701 757 -- --
335.71 0.853 6.13 -- 2.35 -1.34 -- -- 0.128 20.7 23.51 6 -- --
396.47 0.93 6 2.32 -- -- -- -- 0.369 -- -- -- -- --
370.26 0.9 6.1 -- 1.8 -- -- -- 0.144 18.5 -- -- -- --
362.27 0.886 6.11 -- -- -2.1 -- -- 0.0565 -- 0.0002157 758 -- --
538.55 1.08 6.06 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.58 radiation 20.0 90 < th dose independent rect. 3 19
2 181.81 radiation 40.0 90 < th dose dependent rect. 3 19
12 183.13 radiation 30.0 10 < th dose dependent rect. 4 18
17 183.59 radiation 20.0 270 < th dose dependent rect. 1 18
23 183.86 radiation 30.0 270 < th dose dependent rect. 1 9
34 184.30 radiation 40.0 90 < th dose dependent rect. 3 8
44 184.85 radiation 20.0 270 < th dose dependent rect. 1 13
52 184.96 radiation 30.0 90 < th dose dependent rect. 3 16
65 185.48 radiation 20.0 90 < th dose independent rect. 3 8
71 185.65 radiation 10.0 270 < th dose independent rect. 1 18
77 185.81 radiation 20.0 270 < th dose independent rect. 1 8
93 186.27 radiation 20.0 90 < th dose independent rect. 3 6
108 186.63 wind 9.0 270 < th dose dependent rect. 6 19
123 187.04 radiation 30.0 90 < th dose dependent rect. 3 12
127 187.10 radiation 30.0 90 < th dose dependent rect. 3 10
135 187.29 wind 9.0 270 < th dose dependent rect. 6 8
202 188.26 radiation 10.0 14400 < th dose dependent rect. 23 5
208 188.30 humidity 50.0 10 > th dose dependent rect. 4 18
221 188.48 wind 5.0 270 < th dose independent rect. 7 18
227 188.50 wind 9.0 90 < th dose dependent rect. 9 18
233 188.66 precipitation 0.1 270 < th dose independent rect. 6 19
235 188.66 precipitation 0.1 270 < th dose dependent rect. 6 19
243 188.75 precipitation 0.1 270 < th dose independent rect. 5 22
245 188.75 precipitation 0.1 270 < th dose dependent rect. 5 22
252 188.82 temperature 25.0 270 < th dose independent rect. 2 3
262 188.92 radiation 10.0 270 < th dose independent rect. 1 13
278 189.05 humidity 50.0 90 > th dose dependent rect. 3 18
285 189.10 wind 5.0 270 < th dose independent rect. 6 20
291 189.12 humidity 50.0 270 > th dose independent rect. 1 18
296 189.19 atmosphere 1005.0 90 > th dose independent rect. 3 5
333 189.60 humidity 50.0 90 > th dose dependent rect. 3 16
338 189.64 temperature 25.0 270 < th dose independent rect. 1 5
340 189.66 wind 9.0 270 < th dose independent rect. 5 22
361 189.79 atmosphere 1005.0 270 > th dose independent rect. 3 2
376 189.93 wind 7.0 270 < th dose independent rect. 6 9
379 189.95 precipitation 0.1 270 < th dose independent rect. 1 5
380 189.95 precipitation 0.1 270 < th dose dependent rect. 1 5
384 189.96 radiation 20.0 90 < th dose dependent sin 1 NA
392 190.01 radiation 20.0 90 < th dose independent rect. 3 12
393 190.01 humidity 50.0 10 > th dose dependent rect. 4 16
408 190.09 radiation 20.0 10 < th dose dependent sin 0 NA
415 190.16 wind 1.0 270 > th dose independent rect. 3 1
425 190.21 humidity 70.0 90 > th dose independent rect. 3 6
434 190.25 precipitation 0.1 270 < th dose independent rect. 3 2
435 190.25 atmosphere 1010.0 270 < th dose independent rect. 1 5
436 190.25 precipitation 0.1 270 < th dose dependent rect. 3 2
442 190.30 precipitation 0.1 270 < th dose independent rect. 19 6
443 190.30 precipitation 0.1 270 < th dose dependent rect. 19 6
444 190.30 radiation 30.0 90 < th dose dependent rect. 13 20
451 190.36 wind 9.0 270 < th dose independent rect. 1 5
452 190.36 temperature 10.0 270 > th dose independent rect. 1 5
455 190.36 humidity 50.0 270 > th dose independent rect. 1 5
458 190.36 atmosphere 995.0 270 > th dose independent rect. 1 5
464 190.36 temperature 10.0 270 > th dose independent rect. 6 19
472 190.38 precipitation 0.1 270 < th dose independent rect. 6 9
475 190.38 precipitation 0.1 270 < th dose dependent rect. 6 9
480 190.42 atmosphere 1005.0 10 > th dose independent rect. 3 6
502 190.52 radiation 30.0 270 < th dose independent rect. 15 15
523 190.62 radiation 1.0 270 < th dose dependent rect. 3 2
526 190.62 radiation 40.0 90 < th dose dependent rect. 11 23
545 190.72 wind 9.0 270 < th dose independent rect. 3 2
546 190.72 temperature 10.0 270 > th dose independent rect. 3 2
549 190.72 humidity 50.0 270 > th dose independent rect. 3 2
552 190.72 atmosphere 995.0 270 > th dose independent rect. 3 2
553 190.72 atmosphere 1010.0 270 < th dose independent rect. 3 2
555 190.72 radiation 20.0 270 < th dose independent rect. 3 2
559 190.72 temperature 10.0 270 > th dose independent rect. 5 22
562 190.73 radiation 30.0 270 < th dose dependent rect. 3 2
566 190.75 radiation 40.0 90 < th dose dependent rect. 15 18
567 190.76 humidity 50.0 90 > th dose dependent rect. 22 5
570 190.78 radiation 1.0 270 < th dose independent rect. 3 2
575 190.79 radiation 40.0 90 < th dose dependent rect. 13 22
577 190.82 wind 1.0 270 > th dose independent rect. 1 18
581 190.84 temperature 10.0 270 > th dose independent rect. 19 6
582 190.84 temperature 30.0 270 < th dose independent rect. 19 6
583 190.84 humidity 50.0 270 > th dose independent rect. 19 6
584 190.84 atmosphere 995.0 270 > th dose independent rect. 19 6
585 190.84 radiation 1.0 270 < th dose independent rect. 19 6
590 190.84 temperature 10.0 270 > th dose independent rect. 1 18
591 190.84 atmosphere 1015.0 270 < th dose independent rect. 1 18
592 190.84 radiation 1.0 270 < th dose dependent rect. 19 6
598 190.85 temperature 10.0 270 > th dose independent rect. 6 9
599 190.85 atmosphere 1015.0 270 < th dose independent rect. 6 9
600 190.85 temperature 10.0 270 > th dose independent rect. 15 15
657 190.91 temperature 10.0 10 > th dose dependent rect. 8 20
658 190.92 wind 9.0 270 < th dose independent rect. 19 6
670 190.96 wind 7.0 90 < th dose independent rect. 9 18
678 191.00 radiation 40.0 10 < th dose dependent rect. 4 6
680 191.01 temperature 10.0 90 > th dose dependent rect. 7 20
761 191.23 atmosphere 995.0 270 > th dose dependent rect. 1 5
762 191.24 humidity 70.0 10 > th dose independent rect. 3 19
790 191.41 radiation 40.0 270 < th dose dependent rect. 15 15
792 191.44 wind 9.0 270 < th dose independent rect. 15 15
796 191.46 wind 1.0 270 > th dose independent rect. 2 3
799 191.46 humidity 50.0 90 > th dose dependent rect. 3 6
802 191.47 radiation 20.0 90 < th dose independent rect. 13 20
804 191.48 atmosphere 995.0 270 > th dose independent rect. 6 9
805 191.48 wind 9.0 90 < th dose dependent rect. 3 4
809 191.51 temperature 30.0 90 < th dose independent rect. 3 6
842 191.60 wind 5.0 270 < th dose independent rect. 22 2
847 191.64 precipitation 0.1 90 < th dose independent rect. 3 6
849 191.64 precipitation 0.1 90 < th dose dependent rect. 3 6
870 191.71 humidity 70.0 90 > th dose independent rect. 3 8
878 191.74 humidity 80.0 90 > th dose independent rect. 22 5
879 191.75 radiation 20.0 10 < th dose independent rect. 3 11
881 191.76 humidity 50.0 270 > th dose independent rect. 14 16
884 191.77 wind 1.0 270 > th dose independent rect. 1 5
886 191.78 atmosphere 995.0 270 > th dose dependent rect. 2 3
903 191.84 wind 5.0 90 < th dose independent rect. 22 5
915 191.90 atmosphere 995.0 270 > th dose independent rect. 1 18
923 191.96 temperature 10.0 90 > th dose independent rect. 22 5
924 191.96 temperature 30.0 90 < th dose independent rect. 22 5
925 191.96 humidity 50.0 90 > th dose independent rect. 22 5
928 191.96 atmosphere 995.0 90 > th dose independent rect. 22 5
929 191.96 radiation 1.0 90 < th dose independent rect. 22 5
935 191.96 temperature 10.0 90 > th dose independent rect. 3 19
936 191.96 atmosphere 1015.0 90 < th dose independent rect. 3 19
937 191.96 radiation 1.0 90 < th dose dependent rect. 22 5
943 191.96 radiation 30.0 10 < th dose dependent rect. 12 22
953 191.99 precipitation 0.1 90 < th dose independent rect. 22 5
955 191.99 precipitation 0.1 90 < th dose dependent rect. 22 5
957 192.00 precipitation 0.1 270 < th dose independent rect. 1 18
959 192.00 precipitation 0.1 270 < th dose dependent rect. 1 18
985 192.13 wind 9.0 270 < th dose independent rect. 1 18
991 192.14 humidity 60.0 90 > th dose dependent rect. 3 8