BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0139200 Os05g0139200|AK108058
(399 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421 83 2e-16
AT2G40910.1 | chr2:17069938-17071554 REVERSE LENGTH=450 48 9e-06
>AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421
Length = 420
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 152/346 (43%), Gaps = 37/346 (10%)
Query: 8 ATKKRCGGIDGDNPA--ADLTDDLIVEILSRLPAKSVCRFKCVSWRWRRLI-----SHRD 60
A +R GG + AD+ DD++++ILS LP K++ RFK VS RW LI S+R
Sbjct: 15 ARSRRNGGFSSSSATIVADI-DDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRV 73
Query: 61 HRKKLPHTLAGFISHYSVPLHDGIVLIPHFDSIXXXXXXXXXHRLVPDPSLSFLPGYRT- 119
+ P ++GF LH + F S+ +P + ++T
Sbjct: 74 IKSNHPLPISGFF------LHSPREIKYSFVSLDDDATNQRISSSLP----LWFTDHQTD 123
Query: 120 -IFPKDXXXXXXXXXXXKNSPRDESDYVVCNPATQRWIILPEIDRADPVSTVRLGFDPAL 178
I + +S ++Y V NP T+++ +L +I +S L FDP+
Sbjct: 124 MIIMQSTNGLLLCKCSCASSNHFNTNYYVYNPTTKQYTLLHQIAGHIALS---LAFDPSR 180
Query: 179 SPYFHVFAILEHVDGCVSG--------VEIFSLETGAWSHRENGWGDEDDHTVHPDAKSA 230
SP++ VF + + S +E++S G W R T + S
Sbjct: 181 SPHYKVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLW--RRVVPVPTSPSTFIEFSYSV 238
Query: 231 FVDGMVNFISYNSA-IIAVDTEGKKWKTIPFLE-EMTCECISN-GILAFIGQSQGHLYYI 287
F +G VN+ ++S ++ D ++ K +P + E E + + IL F+ +SQG+LYYI
Sbjct: 239 FWNGAVNWYGFSSRDCLSFDINTQEIKILPLPDHEHEDEPLPDPRILMFLDESQGNLYYI 298
Query: 288 NFRDWDSSILSVWTLDDYCSCGWSFKYNISTSQLFGWTNMKLEREY 333
+ SS L V+ ++ S WS KYN+ L + EY
Sbjct: 299 EVNNQSSSNLRVYEMES-NSSSWSVKYNVDLEPLAAAFPEMIRTEY 343
>AT2G40910.1 | chr2:17069938-17071554 REVERSE LENGTH=450
Length = 449
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 11 KRCGGIDGDNPAADLTDDLIVEILSRLPAKSVCRFKCVSWRWRRLISHR---------DH 61
+ C + ++ DL++EI+ RLPAKS+ RFKC+S +W LIS R
Sbjct: 55 RMCSTRERRKYTCEIPPDLLMEIVMRLPAKSMVRFKCISKQWSSLISCRYFCNSLFTSVT 114
Query: 62 RKKLPHTLAGFISH 75
RKK PH + H
Sbjct: 115 RKKQPHIHMCLVDH 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,442,353
Number of extensions: 400339
Number of successful extensions: 1276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,337,553
Effective search space: 2484590794
Effective search space used: 2484590794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)