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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0177400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0259) R2 : 0.0386
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.233 (0.0545) R2dN8 : 0.0498 R2N8 : 0.0386
σ : 0.488
deviance : 109.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.93 0.481 2.84 -0.0842 0.148 -0.279 -0.237 1.28 0.224 21.9 1 10 -- --
106.35 0.48 2.83 -0.0419 0.14 -0.215 -0.313 -- 0.23 22.2 1.1 16 -- --
104.84 0.477 2.84 -0.104 0.154 -0.324 -- 1.49 0.23 21.5 1 16 -- --
106.72 0.481 2.83 -0.0357 0.146 -0.219 -- -- 0.234 21.9 1.1 16 -- --
106.21 0.48 2.84 -0.0893 -- -0.314 -- 1.43 0.217 -- 1.005 16 -- --
107.33 0.486 2.83 -0.0203 0.149 -- -0.31 -- 0.23 23.6 -- -- -- --
107.74 0.486 2.83 -0.0075 0.151 -- -- -- 0.231 23.4 -- -- -- --
107.99 0.484 2.82 -0.0317 -- -0.214 -- -- 0.234 -- 1.085 16 -- --
106.75 0.481 2.82 -- 0.146 -0.213 -- -- 0.237 21.9 1.056 16 -- --
109.17 0.488 2.82 -0.00354 -- -- -- -- 0.233 -- -- -- -- --
107.74 0.486 2.83 -- 0.151 -- -- -- 0.232 23.4 -- -- -- --
108.02 0.484 2.82 -- -- -0.21 -- -- 0.237 -- 1.035 16 -- --
109.17 0.488 2.82 -- -- -- -- -- 0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.72 wind 9.0 1440 < th dose independent rect. 23 1
2 95.72 temperature 10.0 1440 > th dose independent rect. 23 1
5 95.72 temperature 30.0 1440 < th dose independent rect. 23 1
9 95.72 humidity 50.0 1440 > th dose independent rect. 23 1
19 95.72 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 95.72 radiation 1.0 1440 < th dose independent rect. 23 1
40 95.72 temperature 10.0 1440 > th dose independent rect. 24 23
43 95.72 radiation 1.0 1440 < th dose dependent rect. 23 1
48 95.85 humidity 90.0 30 < th dose independent rect. 22 1
49 95.85 atmosphere 1005.0 30 > th dose dependent rect. 22 1
51 95.89 temperature 25.0 30 > th dose independent rect. 22 1
53 95.90 atmosphere 1005.0 30 > th dose independent rect. 22 1
56 95.97 temperature 20.0 30 > th dose dependent rect. 22 1
60 96.01 precipitation 0.1 30 < th dose independent rect. 22 1
61 96.01 precipitation 0.1 30 < th dose dependent rect. 22 1
62 96.06 wind 1.0 30 > th dose independent rect. 22 1
64 96.07 humidity 80.0 30 > th dose independent rect. 22 1
65 96.08 wind 7.0 30 < th dose independent rect. 22 1
67 96.08 temperature 10.0 30 > th dose independent rect. 22 1
69 96.08 temperature 30.0 30 < th dose independent rect. 22 1
70 96.08 humidity 50.0 30 > th dose independent rect. 22 1
74 96.08 atmosphere 1010.0 30 < th dose independent rect. 22 1
76 96.08 radiation 1.0 30 < th dose independent rect. 22 1
81 96.08 temperature 10.0 30 > th dose independent rect. 23 23
82 96.08 radiation 1.0 30 < th dose dependent rect. 22 1
88 96.11 wind 9.0 30 < th dose dependent rect. 22 1
90 96.17 humidity 50.0 30 > th dose dependent rect. 22 1
93 96.20 humidity 90.0 30 < th dose dependent rect. 22 1
97 96.26 wind 1.0 30 > th dose dependent rect. 22 1
99 96.63 atmosphere 1015.0 30 < th dose dependent rect. 22 1
101 96.80 temperature 30.0 30 < th dose dependent rect. 22 1
113 97.57 wind 9.0 30 < th dose independent rect. 23 23
167 101.27 temperature 25.0 90 > th dose independent rect. 2 1
168 101.27 temperature 25.0 90 > th dose dependent rect. 2 1
169 101.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
171 101.30 wind 3.0 30 < th dose dependent rect. 2 1
172 101.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
178 101.33 wind 1.0 30 < th dose independent rect. 2 1
184 101.33 radiation 1.0 4320 < th dose dependent rect. 3 1
189 101.35 humidity 80.0 30 > th dose independent rect. 2 1
191 101.35 atmosphere 1000.0 30 > th dose independent rect. 3 23
192 101.35 humidity 50.0 30 > th dose dependent rect. 2 1
197 101.36 temperature 10.0 30 > th dose independent rect. 2 1
199 101.36 temperature 30.0 30 < th dose independent rect. 2 1
200 101.36 humidity 50.0 30 > th dose independent rect. 2 1
203 101.36 atmosphere 995.0 30 > th dose independent rect. 2 1
205 101.36 atmosphere 1010.0 30 < th dose independent rect. 2 1
207 101.36 radiation 1.0 30 < th dose independent rect. 2 1
212 101.36 precipitation 0.1 30 < th dose independent rect. 2 1
213 101.36 temperature 10.0 30 > th dose independent rect. 3 23
214 101.36 radiation 1.0 30 < th dose dependent rect. 2 1
220 101.36 precipitation 0.1 30 < th dose dependent rect. 2 1
221 101.37 wind 9.0 1440 < th dose independent rect. 3 1
223 101.37 temperature 10.0 1440 > th dose independent rect. 3 1
227 101.37 temperature 30.0 1440 < th dose independent rect. 3 1
231 101.37 humidity 50.0 1440 > th dose independent rect. 3 1
240 101.37 atmosphere 995.0 1440 > th dose independent rect. 3 1
241 101.37 radiation 1.0 1440 < th dose independent rect. 3 1
261 101.37 temperature 10.0 1440 > th dose independent rect. 4 23
281 101.39 precipitation 0.1 30 < th dose independent rect. 3 23
284 101.39 precipitation 0.1 30 < th dose dependent rect. 3 23
286 101.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
289 101.45 temperature 30.0 30 < th dose dependent rect. 2 1
296 101.51 wind 1.0 30 > th dose independent rect. 2 1
340 101.71 temperature 20.0 90 > th dose dependent rect. 19 8
345 101.82 wind 9.0 30 < th dose independent rect. 3 23
375 102.77 temperature 25.0 270 > th dose independent rect. 18 9
381 102.86 wind 1.0 10 > th dose independent rect. 21 23
385 102.89 humidity 50.0 30 > th dose independent rect. 3 23
389 102.95 temperature 25.0 30 > th dose independent rect. 19 4
394 103.01 temperature 20.0 30 > th dose independent rect. 19 8
420 103.36 wind 1.0 10 > th dose independent rect. 23 23
427 103.42 wind 1.0 10 < th dose independent rect. 8 19
432 103.45 temperature 20.0 30 > th dose dependent rect. 19 5
446 103.58 atmosphere 1005.0 30 > th dose dependent rect. 20 3
456 103.62 temperature 25.0 270 > th dose independent rect. 19 1
467 103.67 wind 1.0 10 > th dose independent rect. 24 19
475 103.75 temperature 25.0 270 < th dose independent rect. 18 12
478 103.76 atmosphere 1015.0 30 < th dose independent rect. 3 23
489 103.80 wind 7.0 30 < th dose dependent rect. 19 8
514 103.96 humidity 70.0 720 > th dose independent rect. 3 6
515 103.96 temperature 20.0 270 > th dose dependent rect. 19 1
525 103.99 precipitation 0.1 30 < th dose independent rect. 23 23
526 103.99 precipitation 0.1 30 < th dose dependent rect. 23 23
530 104.01 temperature 30.0 90 > th dose dependent rect. 8 1
570 104.02 atmosphere 995.0 30 > th dose dependent rect. 19 8
579 104.03 temperature 30.0 90 > th dose independent rect. 8 1
651 104.06 wind 3.0 10 < th dose dependent rect. 9 18
653 104.07 atmosphere 995.0 30 > th dose independent rect. 23 23
655 104.08 temperature 25.0 270 > th dose independent sin 12 NA
663 104.11 wind 1.0 10 > th dose independent rect. 23 10
690 104.14 wind 1.0 30 < th dose independent rect. 17 10
697 104.15 temperature 25.0 270 < th dose independent sin 12 NA
709 104.17 radiation 30.0 90 < th dose independent rect. 23 10
710 104.18 humidity 70.0 90 > th dose independent rect. 23 10
717 104.19 humidity 90.0 90 < th dose independent rect. 19 4
747 104.20 temperature 10.0 30 > th dose dependent rect. 3 16
766 104.28 radiation 40.0 720 < th dose independent rect. 15 8
780 104.31 radiation 40.0 10 < th dose dependent rect. 3 23
801 104.35 wind 9.0 720 < th dose independent rect. 3 8
802 104.35 wind 5.0 90 < th dose independent rect. 19 8
828 104.38 atmosphere 1015.0 720 < th dose independent rect. 3 8
838 104.39 atmosphere 1005.0 90 > th dose independent rect. 19 8
839 104.39 temperature 15.0 720 > th dose independent rect. 11 16
854 104.41 temperature 15.0 720 > th dose independent rect. 3 8
861 104.42 atmosphere 1000.0 90 > th dose independent rect. 3 16
871 104.43 atmosphere 995.0 720 > th dose independent rect. 3 8
875 104.43 temperature 25.0 720 > th dose dependent rect. 6 2
879 104.44 atmosphere 1005.0 10 > th dose independent rect. 19 8
890 104.45 wind 1.0 30 < th dose independent rect. 12 15
927 104.47 wind 9.0 90 < th dose independent rect. 3 16
930 104.47 radiation 10.0 10 < th dose independent rect. 3 23
933 104.48 precipitation 0.1 90 < th dose independent rect. 19 8
937 104.48 precipitation 0.1 90 < th dose dependent rect. 19 8
939 104.48 atmosphere 995.0 30 > th dose dependent rect. 3 16
941 104.49 wind 1.0 30 > th dose independent rect. 3 23
949 104.50 temperature 15.0 720 > th dose independent rect. 15 8
966 104.52 temperature 10.0 90 > th dose independent rect. 19 8
968 104.52 humidity 50.0 90 > th dose independent rect. 19 8
970 104.52 atmosphere 995.0 90 > th dose independent rect. 19 8
971 104.52 radiation 1.0 90 < th dose independent rect. 19 8
977 104.52 humidity 80.0 90 > th dose independent rect. 18 9
985 104.52 temperature 10.0 90 > th dose independent rect. 3 16
987 104.52 temperature 10.0 720 > th dose independent rect. 23 16
988 104.52 atmosphere 1015.0 90 < th dose independent rect. 3 16
991 104.52 radiation 1.0 90 < th dose dependent rect. 19 8