BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0177400 Os05g0177400|Os05g0177400
(351 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421 72 5e-13
AT3G16210.1 | chr3:5494533-5495615 REVERSE LENGTH=361 54 1e-07
AT2G15640.1 | chr2:6816792-6818072 REVERSE LENGTH=427 53 2e-07
AT2G16450.1 | chr2:7131520-7132803 REVERSE LENGTH=428 53 3e-07
AT5G52610.1 | chr5:21346423-21347478 REVERSE LENGTH=352 52 3e-07
AT5G03970.1 | chr5:1071721-1072977 REVERSE LENGTH=419 52 5e-07
AT3G10240.1 | chr3:3166698-3167867 FORWARD LENGTH=390 52 7e-07
>AT5G07610.1 | chr5:2406068-2407330 FORWARD LENGTH=421
Length = 420
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 30/328 (9%)
Query: 2 AEGDSRDGRRGWIPPPAEKLT---DDLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHR 58
A +R R G + + DD+L++ILS +P K+L R K VS+RW +I++P
Sbjct: 11 APRSARSRRNGGFSSSSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFS 70
Query: 59 HLLPRYHLGDAIVGFFYSD------TFTNVTGEG-RPFVDPSLP--FLPKCEFLNVLDSC 109
+ + + + I GFF +F ++ + + SLP F + ++ S
Sbjct: 71 NRVIKSNHPLPISGFFLHSPREIKYSFVSLDDDATNQRISSSLPLWFTDHQTDMIIMQST 130
Query: 110 NGLLLCRCWRLADPRRF--DYLVVNPATEQWVILPDSGWSDKVQTARLGFDPVVSSSHFH 167
NGLLLC+C A F +Y V NP T+Q+ +L + L FDP S H+
Sbjct: 131 NGLLLCKC-SCASSNHFNTNYYVYNPTTKQYTLLHQIAGHIALS---LAFDP-SRSPHYK 185
Query: 168 VFEFVEXXXXXXXXXXXXXXXXXXHVKGVEIYSSVTGEWSHKDNGWDWEIRIRDEWNSVF 227
VF + +E+YSS G W + SVF
Sbjct: 186 VF------CLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVF 239
Query: 228 FDGVLHLITLEYV-VAAVDVEGNAWRTIPMP--QSLVEPF-DGIGEGFIGLSQGSLYFVN 283
++G ++ + D+ + +P+P + EP D F+ SQG+LY++
Sbjct: 240 WNGAVNWYGFSSRDCLSFDINTQEIKILPLPDHEHEDEPLPDPRILMFLDESQGNLYYIE 299
Query: 284 TDHDEPYKVSVWVLEDYSSEQWIWKHTV 311
++ + V+ +E SS W K+ V
Sbjct: 300 VNNQSSSNLRVYEMESNSSS-WSVKYNV 326
>AT3G16210.1 | chr3:5494533-5495615 REVERSE LENGTH=361
Length = 360
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 21 LTDDLLVEILSRVPYKSLCRSKCVSRRWRRVISHP----DHRHLLPRYHLGDAIVGFFYS 76
L ++L +EIL R+ K L R +CV + WR +I+ P +R + P + FY
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVS------FYD 58
Query: 77 DTFTNVTGEGR-PFVDPSLPFLPKCEFLNVLDSCNGLLLCRCWRLADPRRFDYLVVNPAT 135
F + EG+ P + L F P + +++D +L C + +V NP +
Sbjct: 59 KNFYMLDVEGKHPVITNKLDF-PLDQ--SMIDESTCVLHCDGTLCVTLKNHTLMVWNPFS 115
Query: 136 EQWVILPDSGWSDKVQTARLGFDPVVSSSHFHVFEFVEXXXXXXXXXXXXXXXXXXHVKG 195
+Q+ I+P+ G G+DPV + V F++ V
Sbjct: 116 KQFKIVPNPGIYQDSNILGFGYDPV--HDDYKVVTFID----------------RLDVST 157
Query: 196 VEIYSSVTGEW--SHKDNGWDWEIRIRDEWNSVFFDGVLHLI----TLEYVVAAVDVEGN 249
++ TG W S + + DW R R F D L+ I + + + ++ +
Sbjct: 158 AHVFEFRTGSWGESLRISYPDWHYRDR---RGTFLDQYLYWIAYRSSADRFILCFNLSTH 214
Query: 250 AWRTIPMP 257
+R +P+P
Sbjct: 215 EYRKLPLP 222
>AT2G15640.1 | chr2:6816792-6818072 REVERSE LENGTH=427
Length = 426
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 39/171 (22%)
Query: 21 LTDDLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHRHLL-------PRYHLG------ 67
+T+DL VEILSR+P KS+ R CVS++W + P + L PR
Sbjct: 6 ITNDLTVEILSRLPAKSVARFHCVSKQWGSIFGSPYFKELFLTRSSTKPRLLFAMAEKVN 65
Query: 68 ---DAIVGFFYSDTFTNVTGEGRPFVDPSLPFLPKCEFLNVLDSCNGLLLCRCWRL---- 120
+ + FF + N P+ S + EF +V S + L +C C+ L
Sbjct: 66 EEKNCVWRFFSTPQLEN------PYEKSSSTLVAAAEF-HVKFSPDKLYICHCYDLKYFS 118
Query: 121 -----------ADPRRFDYLVVNPATEQWVILPDSGWSDKVQTARLGFDPV 160
D L+ NP T ++ ILP+ ++ + + GFDP+
Sbjct: 119 IGYASGLIYLYGDRGEATPLICNPTTGRYAILPNR-YTYRKAYSFFGFDPI 168
>AT2G16450.1 | chr2:7131520-7132803 REVERSE LENGTH=428
Length = 427
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 39/171 (22%)
Query: 21 LTDDLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHRHLL-------PRYHLGDAIVG- 72
+T DL++EILSR+P KS+ R CVS+RW + P + L PR A G
Sbjct: 6 ITIDLILEILSRLPAKSVRRFHCVSKRWASIFGSPYFKELFLTRSSTKPRLLFAIAEKGN 65
Query: 73 --------FFYSDTFTNVTGEGRPFVDPSLPFLPKCEFLNVLDSCNGLLLCRCWRL---- 120
FF S N P+ S + EF +V S + LL+C + L
Sbjct: 66 KEKDCVWRFFSSPQLEN------PYEKSSSTLVATAEF-HVRFSPDNLLICHYYDLKYFS 118
Query: 121 -----------ADPRRFDYLVVNPATEQWVILPDSGWSDKVQTARLGFDPV 160
+ R L+ NP T ++ ILP+ ++ + + GFDP+
Sbjct: 119 IGYAFGLIYIYGNRGRARPLICNPTTGRYAILPNR-YTYRKAFSFFGFDPI 168
>AT5G52610.1 | chr5:21346423-21347478 REVERSE LENGTH=352
Length = 351
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 21 LTDDLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHRHLLPRYHLGDAI----VGFFYS 76
+++DLLVEIL R+P K L R CV + W +I R+ + Y + V F
Sbjct: 2 ISEDLLVEILLRLPVKPLARCLCVCKLWATIIR---SRYFINLYQSRSSTRQPYVMFALR 58
Query: 77 DTFTNVTGEGRPFVDPSLPFLPKCEFLN---VLDSCNGLL----LCRCWRLADPRRFDYL 129
D FT+ PSL C N D NGL+ + + W
Sbjct: 59 DIFTSCRWHFFSSSQPSLVTKATCSANNSSHTPDCVNGLICVEYMSQLW----------- 107
Query: 130 VVNPATEQWVILPDSGWSDKVQTARLGFDPV 160
+ NPAT + V++P S K + +G+DP+
Sbjct: 108 ISNPATRKGVLVPQSAPHQKFRKWYMGYDPI 138
>AT5G03970.1 | chr5:1071721-1072977 REVERSE LENGTH=419
Length = 418
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 36/175 (20%)
Query: 22 TDDLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHRHL-LPRYHLGDAIVGFFYSDTF- 79
++D + EIL +P +++ + VS+RW +I+ P RH L ++ ++GFF +
Sbjct: 25 SNDTMCEILILLPPETIYKLILVSKRWLEIIASPCFRHTYLAKWKPNFELIGFFVCSSMY 84
Query: 80 --TNVTGEGRPFVDPSLPFLPKCEFLN-------------VLDSCNGLLLC----RCWRL 120
+ G RP +PSLP L + +DS +GLLLC + + L
Sbjct: 85 LGRRIDGTRRPRAEPSLPLLSTSSIGDEIESSGILKKLGYYIDSADGLLLCGRHPKAYYL 144
Query: 121 ADPR------------RFDYLVVNPATEQWVILPDSGWSDKVQTARLGFDPVVSS 163
DP F+ L ++ +E PD G+S KV A PV S+
Sbjct: 145 WDPSTQKQQQLPRPRVHFEELCMSLISED---SPDQGFSYKVVRAECVAFPVNST 196
>AT3G10240.1 | chr3:3166698-3167867 FORWARD LENGTH=390
Length = 389
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 24 DLLVEILSRVPYKSLCRSKCVSRRWRRVISHPDHRHLL----PRYHLG-DAIVGFFYS-- 76
DL+ EIL R+P KS+ R +CVS+ W + + P +LL PR L A FF S
Sbjct: 30 DLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINLLTTRSPRLLLCFKANEKFFVSSI 89
Query: 77 ----DTFT--NVTGEGRPFVDP-SLPFLPKCEFLNVLDSCNGLLLCRCWRLADPRRFDYL 129
TF N + +D + F + + +S NGL+ C++ + R +
Sbjct: 90 PQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLI---CFQ--ESARL--I 142
Query: 130 VVNPATEQWVILPDSGWSDKVQTARLGFDPVVSSSHFHVFEF 171
V NP+T Q +ILP + T LG+DPV EF
Sbjct: 143 VWNPSTRQLLILPKPNGNSNDLTIFLGYDPVEGKHKVMCMEF 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,338,179
Number of extensions: 362695
Number of successful extensions: 1228
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 8
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)