BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0525400 Os07g0525400|AK121393
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0525400 RabGAP/TBC domain containing protein 810 0.0
Os02g0810500 RabGAP/TBC domain containing protein 462 e-130
Os11g0587500 RabGAP/TBC domain containing protein 378 e-105
Os10g0518100 RabGAP/TBC domain containing protein 130 2e-30
Os02g0709800 RabGAP/TBC domain containing protein 129 6e-30
Os08g0547200 RabGAP/TBC domain containing protein 125 5e-29
Os09g0528800 RabGAP/TBC domain containing protein 122 7e-28
Os01g0908100 RabGAP/TBC domain containing protein 82 1e-15
Os11g0479300 RabGAP/TBC domain containing protein 77 2e-14
Os04g0377600 Similar to TBC1 domain family member 13 77 4e-14
Os08g0337700 RabGAP/TBC domain containing protein 68 1e-11
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/451 (90%), Positives = 410/451 (90%)
Query: 1 MIKWGIGSSGTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASV 60
MIKWGIGSSGTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASV
Sbjct: 1 MIKWGIGSSGTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASV 60
Query: 61 LSRIQKGGVHPTVRGEVWEFLLGCFDPRSTFDXXXXXXXXXXLQYARWKEDCREMDSHVG 120
LSRIQKGGVHPTVRGEVWEFLLGCFDPRSTFD LQYARWKEDCREMDSHVG
Sbjct: 61 LSRIQKGGVHPTVRGEVWEFLLGCFDPRSTFDEREEIRQIRRLQYARWKEDCREMDSHVG 120
Query: 121 SGKVITAPLITEDGRPIKDPLVLLEAXXXXXXXXXXXXXXXXXXXIDESASRITDKLIID 180
SGKVITAPLITEDGRPIKDPLVLLEA IDESASRITDKLIID
Sbjct: 121 SGKVITAPLITEDGRPIKDPLVLLEATSSENTSDGTSTSSTNGNEIDESASRITDKLIID 180
Query: 181 WKLTLHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIV 240
WKLTLHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIV
Sbjct: 181 WKLTLHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIV 240
Query: 241 LLKDEADAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGG 300
LLKDEADAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGG
Sbjct: 241 LLKDEADAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGG 300
Query: 301 DYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACEDXXXXXXXXXXXXLRG 360
DYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACED LRG
Sbjct: 301 DYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACEDASAHKSKVSKSKLRG 360
Query: 361 VRHFGKWDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILN 420
VRHFGKWDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILN
Sbjct: 361 VRHFGKWDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILN 420
Query: 421 DVNGNLDAKKACAGALKLHKKYLKKVQTKKP 451
DVNGNLDAKKACAGALKLHKKYLKKVQTKKP
Sbjct: 421 DVNGNLDAKKACAGALKLHKKYLKKVQTKKP 451
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 215/435 (49%), Positives = 305/435 (70%), Gaps = 28/435 (6%)
Query: 14 DSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASVLSRIQKGGVHPTV 73
D+ Y +R +C +D K++FK + G TLS R+W+ + +G LDIA ++ R+Q+GG HP +
Sbjct: 21 DTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHPNI 80
Query: 74 RGEVWEFLLGCFDPRSTFDXXXXXXXXXXLQYARWKEDCREMDSHVGSGKVITAPLITED 133
+GEVWEFLLGC+DP+S + L+Y + K CREMD+ VGSG+VIT P+ITED
Sbjct: 81 KGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSGRVITMPVITED 140
Query: 134 GRPIKDPLVLLEAXXXXXXXXXXXXXXXXXXXIDESASRITDKLIIDWKLTLHQIGLDVL 193
G+PI+DP +++ K +I WKLTLHQIGLDV
Sbjct: 141 GQPIQDP--------------------NSVDAEQQASDTPLPKEVIQWKLTLHQIGLDVN 180
Query: 194 RTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAFWCFE 253
RTDR +V+YE++ENL++LWDILAVY+W+DKD+GYCQGMSDLCSPM +LL+ EADAFWCFE
Sbjct: 181 RTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFE 240
Query: 254 KLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAFRMFMVLF 313
+LMRR+RGNF + S+GV +QL L+S+++ +DPKLH+HLE L GG+YLFAFRM MVLF
Sbjct: 241 RLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLF 300
Query: 314 RREVSFGDSLYLWEMMWALEYDPDIFFAACEDXXXXXXXXXXXXLRGVRHFGKWDKDKDK 373
RRE SF D++YLWE+MW++EY+P +F D ++ GK+++ K+
Sbjct: 301 RREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDE--NALKQCGKFEQ-KNL 357
Query: 374 ENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILNDVNGNLDAKKACA 433
+ +K + +P+SVF+VASV++ + +++L +A+GLDD+++ILND+ G+LDAKKAC
Sbjct: 358 QAAKKEEQ-----IPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLDAKKACR 412
Query: 434 GALKLHKKYLKKVQT 448
GALK+H++YL V+
Sbjct: 413 GALKIHERYLTTVKA 427
>Os11g0587500 RabGAP/TBC domain containing protein
Length = 279
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/256 (69%), Positives = 205/256 (80%)
Query: 10 GTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASVLSRIQKGGV 69
G AD +Y++RSDCT VP++KFKIK GKTLSVRKW AAF+ +G LDIASVL+RIQKGGV
Sbjct: 8 GEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLNRIQKGGV 67
Query: 70 HPTVRGEVWEFLLGCFDPRSTFDXXXXXXXXXXLQYARWKEDCREMDSHVGSGKVITAPL 129
HPT+RGEVWEFLLGCFDP STFD +QYA WK++C++MDSHVGSGK+ITAP+
Sbjct: 68 HPTIRGEVWEFLLGCFDPGSTFDEREQIREKRRIQYAIWKQECKDMDSHVGSGKIITAPI 127
Query: 130 ITEDGRPIKDPLVLLEAXXXXXXXXXXXXXXXXXXXIDESASRITDKLIIDWKLTLHQIG 189
ITEDG+PIKDPLVLLEA +D+S + + DK II+WKL LHQIG
Sbjct: 128 ITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWKLLLHQIG 187
Query: 190 LDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAF 249
LDVLRTDR+MVFYENKENLSKLWDILAVYAWIDK++GYCQGMSDLCSPMIVLL DEADAF
Sbjct: 188 LDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAF 247
Query: 250 WCFEKLMRRLRGNFKC 265
WCFE+LMRRL C
Sbjct: 248 WCFERLMRRLMHTAIC 263
>Os10g0518100 RabGAP/TBC domain containing protein
Length = 586
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 33/221 (14%)
Query: 207 NLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAFWCFEKLMRRLRGNFKCT 266
+ ++L IL YA D ++GYCQGMSDL +P++ +L+D+ +AFWCF MR+ R NF+
Sbjct: 379 HAARLVPILEAYAIYDPEIGYCQGMSDLLAPLLAVLEDDNEAFWCFAGFMRKARHNFRLD 438
Query: 267 DQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAFRMFMVLFRREVSFGDSLYLW 326
+ VG+ QL +A II+ D L+ HLE+L D F +RM +V+FRRE++F +L LW
Sbjct: 439 E--VGIRRQLNMVARIIKYKDFHLYRHLEMLQAEDCFFVYRMVVVMFRRELTFEQTLCLW 496
Query: 327 EMMWALEYDPDIFFAACEDXXXXXXXXXXXXLRGVRHFGKWDKDKDKENSKNGSEDTDGP 386
E+MWA D L +R G+ TD
Sbjct: 497 EVMWA-------------DQAANRAGIAKSSLGKLRL---------------GAPPTDD- 527
Query: 387 VPISVFMVASVLKEKREKLLQEARGLDDLIRILNDVNGNLD 427
+ ++ +A+ + +KR+ +++ +D++IR N + G LD
Sbjct: 528 --LLLYAIAASVLQKRKLIIESYSSMDEIIRECNSMAGQLD 566
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 55/253 (21%)
Query: 188 IGLDVLRTDRTMVFYE--NKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDE 245
I DV+RTDR++ +YE + +N+ L DIL Y++ + D+GYCQGMSD +P++ +++DE
Sbjct: 444 IDKDVVRTDRSVPYYEGDDNQNVLVLRDILLTYSFYNFDLGYCQGMSDFLAPILYVMEDE 503
Query: 246 ADAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFA 305
+++FWCF LM RL NF DQ+ G+ QL L+ ++++LDP+LH++ +Y F
Sbjct: 504 SESFWCFAILMERLGANFN-RDQN-GMHAQLLALSKLVELLDPQLHNYFRKNDCLNYFFC 561
Query: 306 FRMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACEDXXXXXXXXXXXXLRGVRHFG 365
FR ++ F+RE SF + LWE++W H+
Sbjct: 562 FRWVLIQFKREFSFDQIMLLWEVLWT-------------------------------HY- 589
Query: 366 KWDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILNDVNGN 425
W + +++ ++LK R +++ E D L++ +N+++G
Sbjct: 590 -WSEH------------------FHLYLCVAILKRYRSRIIGEQMDFDTLLKFINELSGE 630
Query: 426 LDAKKACAGALKL 438
++ +A A L
Sbjct: 631 INLDRAIQDAEAL 643
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 85/123 (69%), Gaps = 2/123 (1%)
Query: 209 SKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAFWCFEKLMRRLRGNFKCTDQ 268
++L +L YA D ++GYCQGMSDL SP+IV+++++ +AFWCF MR+ R NF+ +
Sbjct: 361 ARLVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEEDHEAFWCFVGFMRKARHNFRLDE- 419
Query: 269 SVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAFRMFMVLFRREVSFGDSLYLWEM 328
VG+ QL+ ++ II+ D L+ HL+ L D F +RM +VLFRRE++F +L LWE+
Sbjct: 420 -VGIRRQLKIVSQIIKRKDSHLYRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEV 478
Query: 329 MWA 331
MWA
Sbjct: 479 MWA 481
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 39/241 (16%)
Query: 188 IGL-DVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEA 246
+GL D D +M+++ ++L +L YA D ++GYCQGMSDL SP+I +++++
Sbjct: 358 VGLRDYDHLDPSMIYH-----AARLVGLLEAYAVYDPEIGYCQGMSDLLSPIIAVMEEDD 412
Query: 247 DAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAF 306
+AFWCF MR+ R NF+ + VG+ QL+ ++ II+ D L+ HL+ L D F +
Sbjct: 413 EAFWCFVGFMRKARHNFRLDE--VGIRRQLKIVSQIIKRKDSHLYKHLQKLQAEDCFFVY 470
Query: 307 RMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACEDXXXXXXXXXXXXLRGVRHFGK 366
RM +VLFRRE++F ++ LWE+MWA +R
Sbjct: 471 RMVVVLFRRELTFEQTVCLWEVMWA----------------------DQAAIRAGIGRST 508
Query: 367 WDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILNDVNGNL 426
W K + + + TD + ++ +A+ + ++R+ ++++ +D+++R N + G L
Sbjct: 509 WAKIRLR------APPTDD---LLLYAIAACVLQRRKLIIEKYSSMDEILRECNSMAGQL 559
Query: 427 D 427
D
Sbjct: 560 D 560
>Os01g0908100 RabGAP/TBC domain containing protein
Length = 368
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 21/178 (11%)
Query: 178 IIDWKLTLHQIGLDVLRTDRTMVFYEN-----KENLSKLWDILAVYAWIDKDVGYCQGMS 232
++ + QI DV RT M F+ K N L +IL ++A ++ + Y QGM+
Sbjct: 142 FFEYSEIIEQIDRDVKRTHPDMHFFCGDSSFAKSNQESLKNILIIFAKLNAGIRYVQGMN 201
Query: 233 DLCSPMIVLLKD----------EADAFWCFEKLMRRLRGNF--KCTDQSVGVANQLQYLA 280
++ +P+ + ++ EAD+F+CF +L+ R NF K + +VG+ L L+
Sbjct: 202 EILAPLFFVFRNDPDDKNANFAEADSFFCFMELLSGFRDNFCQKLDNSAVGIQGTLSKLS 261
Query: 281 SIIQVLDPKLHDHLEILGG-GDYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPD 337
++ D +L +LEI +AFR +L +E +F D++++W+ + + DPD
Sbjct: 262 QLVAKYDGELQRYLEITTEINPQFYAFRWITLLLTQEFNFADTIHIWDTLLS---DPD 316
>Os11g0479300 RabGAP/TBC domain containing protein
Length = 338
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 185 LHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKD 244
L QI DV RT M F+ K N L +L +++ ++ + Y QGM+++ +P+ + K+
Sbjct: 119 LEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKN 178
Query: 245 ----------EADAFWCFEKLMRRLRGNF-KCTDQS-VGVANQLQYLASIIQVLDPKLHD 292
EAD F+CF +L+ + N+ K D S VG+ + L L+ +++ D +L
Sbjct: 179 DPDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWR 238
Query: 293 HLEILGG-GDYLFAFRMFMVLFRREVSFGDSLYLWEMMWA-LEYDPDIFFAAC 343
H+EI +AFR +L E SF +++W+ + E PD C
Sbjct: 239 HMEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRIC 291
>Os04g0377600 Similar to TBC1 domain family member 13
Length = 316
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 184 TLHQIGLDVLRTDRTMVFYE--------NKENLSKLWDILAVYAWIDKDVGYCQGMSDLC 235
T+ QI DV RT M F+ N+E+L + IL ++A ++ + Y QGM+++
Sbjct: 91 TIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKR---ILTIFAKLNPGIRYVQGMNEVL 147
Query: 236 SPMIVLLKD----------EADAFWCFEKLMRRLRGNF-KCTDQS-VGVANQLQYLASII 283
+P+ + K+ E DAF+CF +L+ R NF K D S VG+ + + L+ ++
Sbjct: 148 APLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLL 207
Query: 284 QVLDPKLHDHLEILGG-GDYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPD 337
+ D +L HLE++ +AFR +L +E F D +++W+ AL DP+
Sbjct: 208 KRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWD---ALLGDPE 259
>Os08g0337700 RabGAP/TBC domain containing protein
Length = 419
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%)
Query: 187 QIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEA 246
QI D+ RT + ++E + L +L Y++ D +VGYCQG++ + + +++++K E
Sbjct: 183 QIDHDLPRTFPCHSWLNSEEGQASLRRVLVGYSFRDSEVGYCQGLNYVAALLLLVMKTEE 242
Query: 247 DAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAF 306
DAFW L+ + N TD G + + ++ P++ HLE +G L A
Sbjct: 243 DAFWMLAVLLENVLVNDCYTDNLSGCHVEQRVFKDLLAKKCPRIAAHLEAMGFDVSLVAT 302
Query: 307 RMFMVLFRREVSFGDSLYLWEMMW 330
F+ LF + + +L +W++++
Sbjct: 303 EWFLCLFSKTLPSETTLRVWDVLF 326
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,731,014
Number of extensions: 570919
Number of successful extensions: 1374
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 11
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)