Os07g0525400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0525400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RabGAP/TBC domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.94	(0.0407)	R²	:	0.181
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.71	(0.469)	R²_dE	:	0.182	R²_E	:	0.18
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0667	(0.0858)	R²_dN8	:	0.00141	R²_N8	:	-0.000639
σ	:	0.765
deviance	:	269.58
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	79.33
memory length	:	944
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	3.84
open length of G	:	3.05

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
256.07	0.752	2.93	0.388	0.274	3.29	0.703	8.07	0.0996	18.3	79.44	1021	3.97	2.93
261.26	0.753	2.94	0.366	0.283	4.69	0.508	--	0.0909	18.8	79.41	1029	3.87	2.97
257.15	0.747	2.93	0.364	0.278	3.35	--	7.85	0.0864	18.3	79.91	960	4.03	2.87
261.6	0.753	2.93	0.375	0.297	4.78	--	--	0.111	18.3	79.27	997	3.87	3
261.04	0.752	2.92	0.373	--	3.24	--	7.71	0.093	--	80	972	4.03	2.85
321.83	0.841	2.94	0.451	0.195	--	0.303	--	0.0666	17	--	--	--	--
322.06	0.84	2.94	0.451	0.198	--	--	--	0.0681	17.1	--	--	--	--
266.02	0.76	2.93	0.368	--	4.65	--	--	0.107	--	79.49	979	3.82	3.07
265.31	0.759	2.94	--	0.295	4.87	--	--	0.0839	18.4	79.24	1027	3.87	3
324.1	0.841	2.94	0.444	--	--	--	--	0.0631	--	--	--	--	--
327.42	0.846	2.95	--	0.19	--	--	--	0.0178	17.2	--	--	--	--
269.58	0.765	2.94	--	--	4.71	--	--	0.0667	--	79.33	944	3.84	3.05
329.31	0.847	2.95	--	--	--	--	--	0.0138	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	257.03	humidity	80	720	< th	dose dependent	rect.	5	2
5	257.90	humidity	80	720	< th	dose independent	rect.	4	3
14	262.61	humidity	80	1440	> th	dose independent	rect.	4	1
25	263.22	temperature	20	90	< th	dose independent	rect.	8	1
51	266.89	humidity	80	720	> th	dose independent	rect.	24	8
71	269.88	humidity	80	720	< th	dose independent	rect.	23	10
148	274.76	temperature	20	90	< th	dose dependent	rect.	8	1
159	275.71	humidity	50	1440	> th	dose dependent	rect.	4	1
171	276.52	temperature	20	270	< th	dose independent	rect.	5	3
182	276.71	humidity	50	1440	> th	dose dependent	rect.	2	3
188	276.91	humidity	50	1440	> th	dose dependent	rect.	2	1
205	277.88	humidity	80	720	< th	dose independent	sin	8	NA
208	277.98	humidity	80	720	> th	dose independent	rect.	23	14
257	279.34	temperature	20	270	< th	dose independent	rect.	5	14
281	279.95	temperature	20	270	< th	dose independent	rect.	5	9
319	280.76	humidity	80	720	> th	dose independent	sin	7	NA
440	283.85	temperature	25	1440	< th	dose dependent	rect.	14	4
447	283.98	temperature	20	270	< th	dose independent	sin	0	NA
501	285.07	temperature	20	270	> th	dose independent	sin	0	NA
538	285.64	temperature	20	30	< th	dose dependent	rect.	6	2
576	286.22	temperature	25	1440	< th	dose dependent	rect.	11	8
682	288.18	temperature	20	30	< th	dose independent	rect.	6	2
757	288.75	temperature	20	720	< th	dose independent	rect.	4	20
802	289.22	wind	3	270	> th	dose dependent	rect.	5	2
820	289.44	temperature	20	10	< th	dose independent	rect.	6	9
827	289.53	wind	5	4320	< th	dose independent	rect.	20	4
839	289.60	temperature	20	1440	> th	dose independent	rect.	18	1
850	289.65	temperature	20	30	< th	dose dependent	rect.	6	8
872	289.79	wind	5	4320	> th	dose independent	rect.	20	4
876	289.83	temperature	20	30	< th	dose dependent	rect.	6	6
904	290.04	temperature	20	10	< th	dose independent	rect.	6	6
910	290.09	wind	5	1440	< th	dose independent	rect.	22	1
930	290.20	wind	5	4320	< th	dose independent	rect.	20	1
943	290.31	temperature	20	1440	> th	dose independent	rect.	4	19