FiT-DB / Search/ Help/ Sample detail

Os04g0377600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TBC1 domain family member 13.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0125) R2 : 0.628
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.892 (0.0321) R2dC : 0.629 R2C : 0.628
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000451 (0.0263) R2dN8 : 3.1e-07 R2N8 : -0.000838
σ : 0.235
deviance : 25.31
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.02 0.199 10.7 -0.0969 0.875 -0.0288 -0.621 -2.61 -0.0159 16.3 44.47 1673 -- --
22.8 0.224 10.7 0.0732 0.874 0.315 -0.722 -- 0.0165 16.4 44.47 1673 -- --
18.97 0.203 10.7 -0.118 0.876 0.00296 -- -2.71 -0.0238 16.4 44.66 1741 -- --
24.11 0.23 10.7 0.0704 0.87 0.377 -- -- 0.0141 16.5 45.31 6033 -- --
42.35 0.303 10.7 -0.138 -- 0.819 -- -2.22 -0.135 -- 30.83 577 -- --
23.63 0.228 10.7 0.0599 0.895 -- -0.771 -- 0.0104 16.2 -- -- -- --
25.24 0.235 10.7 0.0518 0.893 -- -- -- 0.00622 16.3 -- -- -- --
36.96 0.283 10.7 -0.0289 -- 0.97 -- -- -0.119 -- -2.494 548 -- --
23.61 0.228 10.7 -- 0.866 0.448 -- -- 0.00934 16.6 47 47520 -- --
68.08 0.386 10.7 0.0165 -- -- -- -- -0.0174 -- -- -- -- --
25.31 0.235 10.7 -- 0.892 -- -- -- 0.000451 16.3 -- -- -- --
36.89 0.283 10.7 -- -- 0.952 -- -- -0.0902 -- -2.664 533 -- --
68.09 0.385 10.7 -- -- -- -- -- -0.0193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.42 temperature 15.0 720 > th dose dependent rect. 2 3
4 17.65 temperature 10.0 720 > th dose dependent rect. 24 6
9 17.77 temperature 20.0 720 < th dose independent rect. 5 2
12 17.81 temperature 30.0 720 < th dose dependent rect. 5 3
19 17.98 radiation 40.0 1440 > th dose dependent rect. 14 21
27 18.10 temperature 10.0 720 > th dose dependent rect. 1 10
30 18.13 humidity 70.0 43200 > th dose dependent rect. 4 12
32 18.15 humidity 70.0 43200 > th dose dependent rect. 3 14
41 18.23 temperature 30.0 720 < th dose dependent rect. 22 11
43 18.24 temperature 20.0 720 > th dose independent rect. 2 3
57 18.30 radiation 40.0 1440 > th dose dependent sin 12 NA
61 18.32 temperature 20.0 720 > th dose dependent rect. 24 11
65 18.34 temperature 25.0 270 < th dose independent rect. 5 8
66 18.34 humidity 70.0 43200 > th dose dependent sin 1 NA
70 18.35 radiation 40.0 720 < th dose independent rect. 3 18
73 18.36 temperature 25.0 270 < th dose independent rect. 5 6
79 18.37 temperature 10.0 720 > th dose dependent rect. 23 13
82 18.39 radiation 40.0 720 < th dose independent rect. 8 21
98 18.43 radiation 40.0 720 < th dose independent rect. 8 7
127 18.49 humidity 80.0 43200 > th dose independent rect. 10 14
128 18.49 radiation 20.0 720 < th dose independent rect. 6 14
134 18.50 radiation 10.0 1440 < th dose independent rect. 16 1
140 18.51 radiation 20.0 720 < th dose independent rect. 5 16
141 18.51 radiation 1.0 720 > th dose dependent sin 11 NA
145 18.51 radiation 1.0 1440 > th dose dependent rect. 16 15
146 18.51 radiation 40.0 1440 < th dose dependent rect. 16 15
152 18.53 radiation 40.0 720 < th dose independent sin 0 NA
165 18.55 humidity 80.0 43200 > th dose independent rect. 3 17
166 18.55 radiation 1.0 720 > th dose dependent sin 8 NA
174 18.55 radiation 1.0 1440 > th dose dependent rect. 15 17
175 18.55 radiation 40.0 1440 < th dose dependent rect. 15 17
177 18.56 radiation 20.0 1440 < th dose independent rect. 15 17
178 18.56 temperature 10.0 720 > th dose dependent sin 8 NA
181 18.56 humidity 90.0 43200 > th dose dependent rect. 13 2
182 18.56 radiation 40.0 1440 > th dose dependent rect. 8 3
208 18.57 precipitation 0.1 43200 < th dose independent rect. 6 1
209 18.57 humidity 80.0 43200 > th dose independent rect. 11 12
210 18.57 humidity 80.0 43200 < th dose independent rect. 11 12
214 18.57 humidity 80.0 43200 < th dose independent rect. 2 17
218 18.57 precipitation 0.1 43200 < th dose dependent rect. 6 1
230 18.58 humidity 80.0 43200 > th dose dependent rect. 2 21
246 18.61 radiation 10.0 1440 < th dose independent rect. 16 11
263 18.62 radiation 10.0 1440 < th dose independent rect. 16 9
274 18.63 radiation 40.0 1440 < th dose independent sin 12 NA
275 18.63 radiation 10.0 1440 < th dose independent rect. 16 14
285 18.64 wind 9.0 43200 > th dose independent rect. 9 2
286 18.64 radiation 10.0 1440 < th dose independent rect. 16 7
296 18.65 radiation 10.0 1440 < th dose independent rect. 16 5
312 18.66 humidity 80.0 43200 > th dose independent sin 19 NA
338 18.68 humidity 80.0 43200 > th dose independent sin 1 NA
379 18.72 humidity 80.0 43200 < th dose independent sin 20 NA
380 18.72 humidity 80.0 43200 > th dose independent rect. 4 14
387 18.72 radiation 40.0 1440 < th dose independent rect. 14 21
404 18.73 temperature 10.0 720 > th dose dependent rect. 18 17
417 18.74 precipitation 0.1 43200 > th dose dependent rect. 6 2
422 18.74 radiation 1.0 720 > th dose dependent rect. 16 20
424 18.75 humidity 80.0 43200 < th dose independent sin 1 NA
425 18.75 humidity 90.0 43200 < th dose independent rect. 13 2
438 18.75 wind 7.0 43200 > th dose dependent rect. 5 6
444 18.75 humidity 70.0 43200 > th dose dependent rect. 10 13
448 18.76 precipitation 0.1 43200 > th dose independent rect. 6 1
481 18.78 wind 9.0 43200 < th dose independent rect. 9 2
490 18.78 wind 9.0 43200 > th dose dependent rect. 10 1
532 18.81 humidity 90.0 43200 > th dose independent rect. 13 2
554 18.82 wind 9.0 43200 < th dose independent rect. 5 6
571 18.83 humidity 80.0 43200 > th dose dependent no NA NA
591 18.84 wind 7.0 43200 > th dose dependent rect. 7 4
606 18.84 radiation 40.0 270 > th dose dependent rect. 13 22
608 18.84 humidity 80.0 43200 > th dose dependent rect. 15 23
609 18.84 humidity 80.0 43200 > th dose dependent rect. 19 23
619 18.85 radiation 40.0 720 < th dose independent rect. 3 22
621 18.85 radiation 40.0 1440 < th dose dependent sin 12 NA
623 18.85 wind 9.0 43200 > th dose dependent rect. 22 2
636 18.86 radiation 40.0 720 < th dose independent rect. 10 3
647 18.86 temperature 30.0 720 < th dose dependent sin 8 NA
650 18.86 radiation 1.0 720 > th dose dependent rect. 5 7
670 18.86 radiation 40.0 720 < th dose dependent rect. 4 17
684 18.87 wind 9.0 43200 > th dose dependent rect. 22 5
691 18.87 radiation 40.0 720 < th dose dependent rect. 5 15
718 18.88 humidity 80.0 43200 > th dose dependent rect. 10 23
766 18.91 humidity 90.0 43200 < th dose independent rect. 4 4
844 18.94 humidity 90.0 43200 < th dose independent sin 3 NA
848 18.94 temperature 20.0 720 > th dose independent rect. 2 9
885 18.96 wind 9.0 43200 > th dose independent rect. 23 2
944 18.98 wind 9.0 43200 > th dose independent rect. 5 6
951 18.98 radiation 40.0 270 > th dose dependent sin 7 NA
976 18.99 humidity 70.0 43200 > th dose dependent rect. 10 1
977 18.99 humidity 80.0 43200 > th dose dependent rect. 21 1
996 19.00 humidity 90.0 43200 < th dose independent rect. 3 8