BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0377600 Os04g0377600|AK109611
(316 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0377600 Similar to TBC1 domain family member 13 659 0.0
Os11g0479300 RabGAP/TBC domain containing protein 499 e-142
Os01g0908100 RabGAP/TBC domain containing protein 464 e-131
Os09g0515800 RabGAP/TBC domain containing protein 90 2e-18
Os08g0547200 RabGAP/TBC domain containing protein 80 1e-15
Os02g0810500 RabGAP/TBC domain containing protein 80 3e-15
Os09g0528800 RabGAP/TBC domain containing protein 78 7e-15
Os10g0518100 RabGAP/TBC domain containing protein 77 2e-14
Os07g0525400 RabGAP/TBC domain containing protein 77 2e-14
Os02g0709800 RabGAP/TBC domain containing protein 74 2e-13
>Os04g0377600 Similar to TBC1 domain family member 13
Length = 316
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG 60
QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG
Sbjct: 1 QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG 60
Query: 61 VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ 120
VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ
Sbjct: 61 VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ 120
Query: 121 ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG 180
ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG
Sbjct: 121 ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG 180
Query: 181 FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ 240
FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ
Sbjct: 181 FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ 240
Query: 241 EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI 300
EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI
Sbjct: 241 EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI 300
Query: 301 DHLLHIANKLRGPIPY 316
DHLLHIANKLRGPIPY
Sbjct: 301 DHLLHIANKLRGPIPY 316
>Os11g0479300 RabGAP/TBC domain containing protein
Length = 338
Score = 499 bits (1286), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/314 (74%), Positives = 270/314 (85%), Gaps = 5/314 (1%)
Query: 1 QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG 60
QLLLGYLPT+ A W +ELEKKRSQYSA+KDE L+NPSE RR EE + + NS+ G
Sbjct: 28 QLLLGYLPTERAFWPHELEKKRSQYSAYKDEFLLNPSEKIRRFEESKLLRKKELNSDKIG 87
Query: 61 VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ 120
+LPRA++ ++EHPLS GK+S+WNQ+FQESE +EQIDRDVKRTHPEM FF+ A +NQ
Sbjct: 88 LLPRAKVTNEEHPLSFGKSSLWNQYFQESEILEQIDRDVKRTHPEMPFFS-----AKANQ 142
Query: 121 ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG 180
ESL+R+L IF+KLNP IRYVQGMNEVLAPL+YVFKNDP+ +N+ SAE D FFCFVELLSG
Sbjct: 143 ESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDPDTSNSASAEADTFFCFVELLSG 202
Query: 181 FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ 240
F+DN+CK LDNS VGIRST+SKLSQLLKRHDEELWRH+E+ TKV PQ+YAFRWITLLLT
Sbjct: 203 FKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLLTM 262
Query: 241 EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI 300
EF F CIHIWDA+LGDPEGP TLLRICCAMLILVRRRLLAGDFTAN++LLQ YPPTNI
Sbjct: 263 EFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPTNI 322
Query: 301 DHLLHIANKLRGPI 314
DHLLHIAN+LRG +
Sbjct: 323 DHLLHIANRLRGSV 336
>Os01g0908100 RabGAP/TBC domain containing protein
Length = 368
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/310 (70%), Positives = 258/310 (83%), Gaps = 1/310 (0%)
Query: 1 QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG 60
+LLLGYLP+D ALW EL KKRSQY+AFK+E L NP E+ R+ E+ S G
Sbjct: 59 KLLLGYLPSDRALWEQELAKKRSQYAAFKEEFLSNPMEIARQ-RELEGQGSENAGSIYNG 117
Query: 61 VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ 120
+L R+E+ +EHPLSLGKT+ WNQFF+ SE IEQIDRDVKRTHP+M FF GDSS A SNQ
Sbjct: 118 LLHRSEVTQEEHPLSLGKTTAWNQFFEYSEIIEQIDRDVKRTHPDMHFFCGDSSFAKSNQ 177
Query: 121 ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG 180
ESLK IL IFAKLN GIRYVQGMNE+LAPL++VF+NDP++ NA AE D+FFCF+ELLSG
Sbjct: 178 ESLKNILIIFAKLNAGIRYVQGMNEILAPLFFVFRNDPDDKNANFAEADSFFCFMELLSG 237
Query: 181 FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ 240
FRDNFC++LDNS VGI+ T+SKLSQL+ ++D EL R+LE+ T++NPQFYAFRWITLLLTQ
Sbjct: 238 FRDNFCQKLDNSAVGIQGTLSKLSQLVAKYDGELQRYLEITTEINPQFYAFRWITLLLTQ 297
Query: 241 EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI 300
EF F D IHIWD LL DP+GPQ TLLRICCAMLILVR+RLLAGDFT+NLKLLQ+YPPTNI
Sbjct: 298 EFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTNI 357
Query: 301 DHLLHIANKL 310
HLL++ANKL
Sbjct: 358 SHLLYVANKL 367
>Os09g0515800 RabGAP/TBC domain containing protein
Length = 444
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 87 QESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKRILTIFAKLNPGIRYVQGMNEV 146
+E + QI D RT P++ FF Q+SL+RIL +A +P YVQG+N++
Sbjct: 200 EEINMLRQIAVDCPRTVPDVTFFQHPQI-----QKSLERILYTWAIRHPASGYVQGINDL 254
Query: 147 LAPLYYVFKNDPEENNAES-------------AEPDAFFCFVELLSGFRDNFCKQLDNSV 193
L P VF ++ E N ++ E D ++C + L G +D++ +
Sbjct: 255 LTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYT----FAQ 310
Query: 194 VGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDA 253
GI+ + +L +L+ R DE + +H+E QF AFRW L+ +E F +WD
Sbjct: 311 PGIQRLVFRLKELVHRIDEPVSKHMEEQGLDFLQF-AFRWFNCLMIREIPFHLVTRLWDT 369
Query: 254 LLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNIDH 302
L + + L+ I + L+ +L DF + LQ P N H
Sbjct: 370 YLAEGDYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAH 418
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 48/240 (20%)
Query: 60 GVLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQ-------IDRDVKRTHPEMQFFNGD 112
V E+ D+ P + S + FF+ ++T E I D RT PE + +
Sbjct: 269 SVSANTEVNRDQGPKFVRSASSKSGFFRNNKTPEDFATWQRIIRLDAIRTDPEWALLSHN 328
Query: 113 SSDALSNQESLK-------------------------RILTIFAKLNPGIRYVQGMNEVL 147
++ +S +++L+ +L +A +P I Y QGM+++L
Sbjct: 329 RAE-VSKEKALQYARSVGLKDYDHLEPYMIYHAARLVAVLEAYALFDPEIGYCQGMSDLL 387
Query: 148 APLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLL 207
+P+ V + D E AF+CFV + R NF +LD VGIR + +SQ++
Sbjct: 388 SPIIVVMEEDHE----------AFWCFVGFMRKARHNF--RLDE--VGIRRQLKIVSQII 433
Query: 208 KRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDALLGDPEGPQATLLR 267
KR D L+RHL+ + + F+ +R + +L +E F + +W+ + D +A + R
Sbjct: 434 KRKDSHLYRHLQKL-QAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGR 492
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 24/167 (14%)
Query: 91 TIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKR---ILTIFAKLNPGIRYVQGMNEVL 147
T+ QI DV RT ++ ++ +QE+L R IL +++ ++ I Y QGM+++
Sbjct: 171 TLHQIGLDVNRTDRQLVYYE--------SQENLARLWDILAVYSWVDKDIGYCQGMSDLC 222
Query: 148 APLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLL 207
+P+ + ++ E DAF+CF L+ R NF ++ +G+RS ++ LS ++
Sbjct: 223 SPMSILLEH----------EADAFWCFERLMRRVRGNFVSS--STSIGVRSQLTILSSVM 270
Query: 208 KRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDAL 254
K D +L HLE + +AFR + +L +EF F D +++W+ +
Sbjct: 271 KAVDPKLHEHLENLDG-GEYLFAFRMLMVLFRREFSFVDTMYLWELM 316
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
Query: 126 ILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNF 185
+L +A +P I Y QGM+++L+P+ V + D E AF+CFV + R NF
Sbjct: 380 LLEAYAVYDPEIGYCQGMSDLLSPIIAVMEEDDE----------AFWCFVGFMRKARHNF 429
Query: 186 CKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFR 245
+LD VGIR + +SQ++KR D L++HL+ + + F+ +R + +L +E F
Sbjct: 430 --RLDE--VGIRRQLKIVSQIIKRKDSHLYKHLQKL-QAEDCFFVYRMVVVLFRRELTFE 484
Query: 246 DCIHIWDALLGDPEGPQATLLR 267
+ +W+ + D +A + R
Sbjct: 485 QTVCLWEVMWADQAAIRAGIGR 506
>Os10g0518100 RabGAP/TBC domain containing protein
Length = 586
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 126 ILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNF 185
IL +A +P I Y QGM+++LAPL V ++D E AF+CF + R NF
Sbjct: 386 ILEAYAIYDPEIGYCQGMSDLLAPLLAVLEDDNE----------AFWCFAGFMRKARHNF 435
Query: 186 CKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFR 245
+LD VGIR ++ +++++K D L+RHLE++ + F+ +R + ++ +E F
Sbjct: 436 --RLDE--VGIRRQLNMVARIIKYKDFHLYRHLEML-QAEDCFFVYRMVVVMFRRELTFE 490
Query: 246 DCIHIWDALLGDPEGPQATLLRICCAMLIL 275
+ +W+ + D +A + + L L
Sbjct: 491 QTLCLWEVMWADQAANRAGIAKSSLGKLRL 520
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 91 TIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKR---ILTIFAKLNPGIRYVQGMNEVL 147
T+ QI DV RT M F+ N+E+L + IL ++A ++ + Y QGM+++
Sbjct: 184 TLHQIGLDVLRTDRTMVFYE--------NKENLSKLWDILAVYAWIDKDVGYCQGMSDLC 235
Query: 148 APLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLL 207
+P+ + K+ E DAF+CF +L+ R NF K D S VG+ + + L+ ++
Sbjct: 236 SPMIVLLKD----------EADAFWCFEKLMRRLRGNF-KCTDQS-VGVANQLQYLASII 283
Query: 208 KRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWD---ALLGDPE 259
+ D +L HLE++ +AFR +L +E F D +++W+ AL DP+
Sbjct: 284 QVLDPKLHDHLEILGG-GDYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPD 337
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 95 IDRDVKRTHPEMQFFNGDSSDALSNQESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVF 154
ID+DV RT + ++ GD + N L+ IL ++ N + Y QGM++ LAP+ YV
Sbjct: 444 IDKDVVRTDRSVPYYEGDDN---QNVLVLRDILLTYSFYNFDLGYCQGMSDFLAPILYVM 500
Query: 155 KNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEEL 214
++ E ++F+CF L+ NF + + G+ + + LS+L++ D +L
Sbjct: 501 ED----------ESESFWCFAILMERLGANFNRDQN----GMHAQLLALSKLVELLDPQL 546
Query: 215 WRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDALLGDPEGPQATLLRICCAMLI 274
+ +N F+ FRW+ + +EF F + +W+ L L +C A+L
Sbjct: 547 HNYFRKNDCLN-YFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWSEHFHLY-LCVAILK 604
Query: 275 LVRRRLLAG--DFTANLKLLQSYP-PTNIDHLLHIANKL 310
R R++ DF LK + N+D + A L
Sbjct: 605 RYRSRIIGEQMDFDTLLKFINELSGEINLDRAIQDAEAL 643
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,837,375
Number of extensions: 427118
Number of successful extensions: 1017
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 10
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)