Os09g0515800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os09g0515800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.36 | 0.232 | 9.94 | -0.186 | 0.83 | 0.45 | -0.518 | 0.746 | -0.112 | 6.9 | 21.3 | 1367 | -- | -- |
| 25.29 | 0.234 | 9.96 | -0.325 | 0.864 | 0.37 | -0.335 | -- | -0.154 | 6.92 | 21.7 | 1177 | -- | -- |
| 25.01 | 0.233 | 9.94 | -0.179 | 0.824 | 0.433 | -- | 0.735 | -0.104 | 6.91 | 21.4 | 1355 | -- | -- |
| 25.74 | 0.236 | 9.96 | -0.344 | 0.855 | 0.358 | -- | -- | -0.162 | 7.05 | 21.9 | 1025 | -- | -- |
| 60.81 | 0.363 | 9.96 | -0.129 | -- | 0.411 | -- | 0.755 | -0.094 | -- | 21.85 | 1377 | -- | -- |
| 29.86 | 0.256 | 9.94 | -0.21 | 0.836 | -- | -0.531 | -- | -0.0437 | 6.82 | -- | -- | -- | -- |
| 30.58 | 0.259 | 9.94 | -0.22 | 0.834 | -- | -- | -- | -0.0423 | 6.83 | -- | -- | -- | -- |
| 62.12 | 0.367 | 9.98 | -0.357 | -- | 0.357 | -- | -- | -0.137 | -- | 21.9 | 1366 | -- | -- |
| 28.51 | 0.249 | 9.95 | -- | 0.848 | 0.272 | -- | -- | -0.0984 | 7.04 | 22.3 | 929 | -- | -- |
| 67 | 0.382 | 9.96 | -0.201 | -- | -- | -- | -- | -0.0263 | -- | -- | -- | -- | -- |
| 31.85 | 0.264 | 9.93 | -- | 0.832 | -- | -- | -- | -0.0179 | 6.85 | -- | -- | -- | -- |
| 64.69 | 0.375 | 9.97 | -- | -- | 0.28 | -- | -- | -0.09 | -- | 22.32 | 1365 | -- | -- |
| 68.07 | 0.385 | 9.95 | -- | -- | -- | -- | -- | -0.00393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 23.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 9 | 23.55 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 60 | 24.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 89 | 24.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 12 |
| 103 | 24.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 113 | 24.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 125 | 24.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 138 | 24.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 141 | 24.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 146 | 24.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 158 | 24.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 184 | 24.75 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 197 | 24.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 200 | 24.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 204 | 24.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 219 | 24.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 238 | 24.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 246 | 24.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 260 | 24.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 263 | 24.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 273 | 24.88 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 287 | 24.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 298 | 24.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 324 | 24.91 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 356 | 24.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 358 | 24.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 428 | 24.96 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 429 | 24.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 436 | 24.97 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 449 | 24.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 456 | 24.98 | temperature | 15 | 10 | > th | dose dependent | sin | 16 | NA |
| 457 | 24.98 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 460 | 24.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 474 | 24.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 486 | 24.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 572 | 25.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 609 | 25.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 629 | 25.05 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 687 | 25.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 689 | 25.07 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 712 | 25.08 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 734 | 25.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 782 | 25.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 879 | 25.12 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 921 | 25.13 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 924 | 25.13 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 965 | 25.14 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 970 | 25.14 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 1 |