BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0515800 Os09g0515800|AK066076
(444 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0515800 RabGAP/TBC domain containing protein 870 0.0
Os11g0479300 RabGAP/TBC domain containing protein 115 7e-26
Os01g0908100 RabGAP/TBC domain containing protein 112 4e-25
Os04g0377600 Similar to TBC1 domain family member 13 91 2e-18
Os08g0337700 RabGAP/TBC domain containing protein 86 6e-17
Os02g0709800 RabGAP/TBC domain containing protein 74 2e-13
Os08g0412600 RabGAP/TBC domain containing protein 72 6e-13
>Os09g0515800 RabGAP/TBC domain containing protein
Length = 444
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/430 (96%), Positives = 417/430 (96%)
Query: 15 SPNNTEWRFNQTLRNVQGMLKGRSFPGKVLLTRRSEPLSPPEYSPRYENDRDEYEQNEGS 74
SPNNTEWRFNQTLRNVQGMLKGRSFPGKVLLTRRSEPLSPPEYSPRYENDRDEYEQNEGS
Sbjct: 15 SPNNTEWRFNQTLRNVQGMLKGRSFPGKVLLTRRSEPLSPPEYSPRYENDRDEYEQNEGS 74
Query: 75 QEGKGQASGNTADSMSAXXXXXXXXXXXXXLPDAQGLVSGARATDSARIAKFTNELSRPA 134
QEGKGQASGNTADSMSA LPDAQGLVSGARATDSARIAKFTNELSRPA
Sbjct: 75 QEGKGQASGNTADSMSAKKSNPPSTSSTNSLPDAQGLVSGARATDSARIAKFTNELSRPA 134
Query: 135 VILDKLRELSWSGVPPYMRPNIWRLLLGYAPPNADRREGVLTRKRLEYVECVSQYYDIPD 194
VILDKLRELSWSGVPPYMRPNIWRLLLGYAPPNADRREGVLTRKRLEYVECVSQYYDIPD
Sbjct: 135 VILDKLRELSWSGVPPYMRPNIWRLLLGYAPPNADRREGVLTRKRLEYVECVSQYYDIPD 194
Query: 195 TERSDEEINMLRQIAVDCPRTVPDVTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDL 254
TERSDEEINMLRQIAVDCPRTVPDVTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDL
Sbjct: 195 TERSDEEINMLRQIAVDCPRTVPDVTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDL 254
Query: 255 LTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYTFAQPGIQ 314
LTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYTFAQPGIQ
Sbjct: 255 LTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYTFAQPGIQ 314
Query: 315 RLVFRLKELVHRIDEPVSKHMEEQGLDFLQFAFRWFNCLMIREIPFHLVTRLWDTYLAEG 374
RLVFRLKELVHRIDEPVSKHMEEQGLDFLQFAFRWFNCLMIREIPFHLVTRLWDTYLAEG
Sbjct: 315 RLVFRLKELVHRIDEPVSKHMEEQGLDFLQFAFRWFNCLMIREIPFHLVTRLWDTYLAEG 374
Query: 375 DYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAHHELEMVLSRAYMWHTM 434
DYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAHHELEMVLSRAYMWHTM
Sbjct: 375 DYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAHHELEMVLSRAYMWHTM 434
Query: 435 FKSSPSHLAS 444
FKSSPSHLAS
Sbjct: 435 FKSSPSHLAS 444
>Os11g0479300 RabGAP/TBC domain containing protein
Length = 338
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 200 EEINMLRQIAVDCPRTVPDVTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDLLTPFL 259
+E +L QI D RT P++ FF Q+SL R+L ++ +P YVQG+N++L P
Sbjct: 114 QESEILEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLF 173
Query: 260 VVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYT----FAQPGIQR 315
VF + + DT + ++ EAD ++C + L G +D+Y +Q GI+
Sbjct: 174 YVF-----KNDPDT--------SNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRS 220
Query: 316 LVFRLKELVHRIDEPVSKHMEEQGLDFLQ-FAFRWFNCLMIREIPFHLVTRLWDTYLAEG 374
+ +L +L+ R DE + +HME + Q +AFRW L+ E F++ +WD L +
Sbjct: 221 TLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDP 280
Query: 375 DYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAH 418
+ PD L+ I + L+ +L DF + LQH P N H
Sbjct: 281 EGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPTNIDH 324
>Os01g0908100 RabGAP/TBC domain containing protein
Length = 368
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 153/353 (43%), Gaps = 68/353 (19%)
Query: 121 ARIAKFTNELSRPAVILDKLRELSWSGVP--PYMRPNIWRLLLGYAPPNADRREGVLTRK 178
+R ++ LS+ + LD+LR L+ GVP +RP +W+LLLGY P + E L +K
Sbjct: 20 SRQSRLLAALSKKVIDLDELRMLAAQGVPDGAAVRPTVWKLLLGYLPSDRALWEQELAKK 79
Query: 179 RLEYVECVSQYYDIP--------------------------DTERSDEE----------- 201
R +Y ++ P +E + EE
Sbjct: 80 RSQYAAFKEEFLSNPMEIARQRELEGQGSENAGSIYNGLLHRSEVTQEEHPLSLGKTTAW 139
Query: 202 ------INMLRQIAVDCPRTVPDVTFFQ-----HPQIQKSLERILYTWAIRHPASGYVQG 250
++ QI D RT PD+ FF Q+SL+ IL +A + YVQG
Sbjct: 140 NQFFEYSEIIEQIDRDVKRTHPDMHFFCGDSSFAKSNQESLKNILIIFAKLNAGIRYVQG 199
Query: 251 INDLLTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYT--- 307
+N++L P VF ++ + N + EAD ++C + L G +D++
Sbjct: 200 MNEILAPLFFVFRNDPDDKNANF-------------AEADSFFCFMELLSGFRDNFCQKL 246
Query: 308 -FAQPGIQRLVFRLKELVHRIDEPVSKHMEEQGLDFLQF-AFRWFNCLMIREIPFHLVTR 365
+ GIQ + +L +LV + D + +++E QF AFRW L+ +E F
Sbjct: 247 DNSAVGIQGTLSKLSQLVAKYDGELQRYLEITTEINPQFYAFRWITLLLTQEFNFADTIH 306
Query: 366 LWDTYLAEGDYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAH 418
+WDT L++ D + L+ I + L+ +L DF + LQ+ P N +H
Sbjct: 307 IWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTNISH 359
>Os04g0377600 Similar to TBC1 domain family member 13
Length = 316
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 200 EEINMLRQIAVDCPRTVPDVTFFQHPQI-----QKSLERILYTWAIRHPASGYVQGINDL 254
+E + QI D RT P++ FF Q+SL+RIL +A +P YVQG+N++
Sbjct: 87 QESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKRILTIFAKLNPGIRYVQGMNEV 146
Query: 255 LTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYT----FAQ 310
L P VF ++ E N ++ E D ++C + L G +D++ +
Sbjct: 147 LAPLYYVFKNDPEENNAES-------------AEPDAFFCFVELLSGFRDNFCKQLDNSV 193
Query: 311 PGIQRLVFRLKELVHRIDEPVSKHMEEQGLDFLQF-AFRWFNCLMIREIPFHLVTRLWDT 369
GI+ + +L +L+ R DE + +H+E QF AFRW L+ +E F +WD
Sbjct: 194 VGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDA 253
Query: 370 YLAEGDYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAH 418
L + + L+ I + L+ +L DF + LQ P N H
Sbjct: 254 LLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNIDH 302
>Os08g0337700 RabGAP/TBC domain containing protein
Length = 419
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 130/319 (40%), Gaps = 65/319 (20%)
Query: 108 AQGLVSGARATDSARIAKFTNELSRPAVILDKLRELSWSGVPPYMRPNIWRLLLGYAPPN 167
+ G G + S +++ TN ++ LR L GVPP +RP +W + G A
Sbjct: 107 SNGGSEGVISVTSLKLSVLTNTIT--------LRRLIRKGVPPVLRPKVWLSVSGAA--- 155
Query: 168 ADRREGVLTRKRLEYVECVSQYYD--IPDTERSDEEINMLRQIAVDCPRTVPDVTFFQHP 225
+KR E YYD I TE + QI D PRT P ++
Sbjct: 156 ---------KKRSTVPET---YYDELIRATEGKTTPATL--QIDHDLPRTFPCHSWLNSE 201
Query: 226 QIQKSLERILYTWAIRHPASGYVQGINDLLTPFLVVFLSEHLEGNMDTWSMEKLSPQDVS 285
+ Q SL R+L ++ R GY QG+N + L+V +E
Sbjct: 202 EGQASLRRVLVGYSFRDSEVGYCQGLNYVAALLLLVMKTEE------------------- 242
Query: 286 NIEADCYWCLSKFLDGM--QDHYTFAQPG--IQRLVFRLKELVHRIDEPVSKHMEEQGLD 341
D +W L+ L+ + D YT G +++ VF K+L+ + ++ H+E G D
Sbjct: 243 ----DAFWMLAVLLENVLVNDCYTDNLSGCHVEQRVF--KDLLAKKCPRIAAHLEAMGFD 296
Query: 342 FLQFAFRWFNCLMIREIPFHLVTRLWDTYLAEGDYLPDFLVYIS-ASFLLTWSDKLKKLD 400
A WF CL + +P R+WD EG L +++ A F + D L+
Sbjct: 297 VSLVATEWFLCLFSKTLPSETTLRVWDVLFNEG---AKVLFHVALAIFKMREDDLLRIQH 353
Query: 401 FQEMVMFLQHLPTRNWAHH 419
+++ LQ AHH
Sbjct: 354 IGDVIDILQ-----TTAHH 367
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 38/282 (13%)
Query: 141 RELSWSGVPPYMRPNIWRLLLGYAPPNAD--RREGVLTRKRLEYVECVSQYYDIPDTE-- 196
+++ + G+ +R +W+ LLGY ++ RE + KR EY SQ+ I T+
Sbjct: 373 KKVFYGGIDHVLRKEVWKFLLGYHEYDSTYAEREYLAVMKRTEYEAIKSQWKSISSTQAK 432
Query: 197 ---RSDEEINMLRQIAVDCPRTVPDVTFFQHPQIQKSL--ERILYTWAIRHPASGYVQGI 251
+ E ++ + V R+VP +++ Q L IL T++ + GY QG+
Sbjct: 433 RFTKFRERKGLIDKDVVRTDRSVP---YYEGDDNQNVLVLRDILLTYSFYNFDLGYCQGM 489
Query: 252 NDLLTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYTFAQP 311
+D L P L V ME E++ +WC + ++ + ++ Q
Sbjct: 490 SDFLAPILYV--------------MED---------ESESFWCFAILMERLGANFNRDQN 526
Query: 312 GIQRLVFRLKELVHRIDEPVSKHMEEQGLDFLQFAFRWFNCLMIREIPFHLVTRLWDTYL 371
G+ + L +LV +D + + + F FRW RE F + LW+ L
Sbjct: 527 GMHAQLLALSKLVELLDPQLHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEV-L 585
Query: 372 AEGDYLPDFLVYISASFLLTWSDKL--KKLDFQEMVMFLQHL 411
+ F +Y+ + L + ++ +++DF ++ F+ L
Sbjct: 586 WTHYWSEHFHLYLCVAILKRYRSRIIGEQMDFDTLLKFINEL 627
>Os08g0412600 RabGAP/TBC domain containing protein
Length = 284
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 54/253 (21%)
Query: 133 PAVILDKLRELSWSGVPPYMRPNIWRLLLGYAPPNADRREGVLTRKRLEYVECVSQYYDI 192
P V+ ++R+ G+P +R +W+L+ G R+ +L + Y +
Sbjct: 77 PHVVKRRIRK----GIPDCLRGLVWQLISG-------SRDLLLMNPGV--------YETL 117
Query: 193 PDTERSDEEINMLRQIAVDCPRTVPDVTFFQ--HPQIQKSLERILYTWAIRHPASGYVQG 250
E S E+ ++R D RT P FFQ H Q+SL +L +++ GYVQG
Sbjct: 118 VIYETSASELEIIR----DISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQG 173
Query: 251 INDLLTPFLVVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDG-----MQDH 305
+ L L++++SE D +W L L G M+
Sbjct: 174 MG-FLAGLLLLYMSEE-----------------------DAFWLLVALLKGAVHAPMEGL 209
Query: 306 YTFAQPGIQRLVFRLKELVHRIDEPVSKHMEEQGLDFLQFAFRWFNCLMIREIPFHLVTR 365
Y P +Q+ +++ ++LV + +H E+ ++ +A +WF + PFHL R
Sbjct: 210 YQAGLPLVQQYLYQFEKLVLEQMPQLGQHFIEEMINPSMYASQWFITVFSYSFPFHLTLR 269
Query: 366 LWDTYLAEGDYLP 378
+WD +L E LP
Sbjct: 270 VWDVFLYEVRILP 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,284,794
Number of extensions: 639887
Number of successful extensions: 1450
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 7
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)