Os08g0412600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os08g0412600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.83 | 0.181 | 9.15 | 0.0331 | 0.158 | -0.624 | -0.0164 | 1.55 | 0.258 | 1.82 | 23.5 | 226 | -- | -- |
| 15.77 | 0.185 | 9.18 | -0.214 | 0.185 | -0.471 | -0.259 | -- | 0.182 | 2.77 | 23.58 | 162 | -- | -- |
| 14.82 | 0.179 | 9.15 | 0.034 | 0.159 | -0.617 | -- | 1.5 | 0.263 | 2.01 | 23.22 | 214 | -- | -- |
| 15.97 | 0.186 | 9.18 | -0.213 | 0.179 | -0.477 | -- | -- | 0.184 | 2.71 | 23.57 | 162 | -- | -- |
| 15.71 | 0.185 | 9.14 | 0.0781 | -- | -0.764 | -- | 1.78 | 0.28 | -- | 23.75 | 161 | -- | -- |
| 19.82 | 0.209 | 9.19 | -0.306 | 0.377 | -- | -0.101 | -- | 0.122 | 3.51 | -- | -- | -- | -- |
| 19.86 | 0.209 | 9.19 | -0.304 | 0.376 | -- | -- | -- | 0.122 | 3.52 | -- | -- | -- | -- |
| 17.1 | 0.193 | 9.17 | -0.189 | -- | -0.628 | -- | -- | 0.207 | -- | 23.79 | 122 | -- | -- |
| 17.07 | 0.192 | 9.17 | -- | 0.156 | -0.537 | -- | -- | 0.221 | 2.35 | 23.03 | 187 | -- | -- |
| 27.76 | 0.246 | 9.19 | -0.288 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 22.3 | 0.221 | 9.18 | -- | 0.37 | -- | -- | -- | 0.156 | 3.53 | -- | -- | -- | -- |
| 17.94 | 0.197 | 9.17 | -- | -- | -0.665 | -- | -- | 0.233 | -- | 23.47 | 125 | -- | -- |
| 29.96 | 0.255 | 9.18 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 2 | 14.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 21 |
| 9 | 14.74 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 28 | 14.85 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 30 | 14.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 58 | 14.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 99 | 15.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 121 | 15.17 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 148 | 15.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 154 | 15.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 177 | 15.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 191 | 15.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 199 | 15.28 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 268 | 15.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 487 | 15.43 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 542 | 15.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 806 | 15.59 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 15 |
| 839 | 15.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 846 | 15.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |