Os10g0518100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0518100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RabGAP/TBC domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.38 | 0.196 | 10.5 | -0.578 | 0.95 | -0.464 | -0.388 | -0.919 | -0.275 | 4.37 | 22.9 | 30 | -- | -- |
| 18.41 | 0.201 | 10.5 | -0.671 | 0.94 | -0.332 | -0.619 | -- | -0.292 | 4.38 | 22.9 | 30 | -- | -- |
| 17.7 | 0.197 | 10.5 | -0.556 | 0.95 | -0.485 | -- | -1.09 | -0.27 | 4.34 | 22.9 | 30 | -- | -- |
| 19.45 | 0.207 | 10.5 | -0.664 | 0.936 | -0.328 | -- | -- | -0.288 | 4.4 | 22.9 | 10 | -- | -- |
| 53.89 | 0.342 | 10.5 | -0.166 | -- | 0.848 | -- | -1.46 | -0.0489 | -- | 34 | 206 | -- | -- |
| 19.74 | 0.208 | 10.5 | -0.603 | 0.912 | -- | -0.613 | -- | -0.249 | 4.54 | -- | -- | -- | -- |
| 20.75 | 0.213 | 10.5 | -0.599 | 0.909 | -- | -- | -- | -0.246 | 4.57 | -- | -- | -- | -- |
| 54.84 | 0.345 | 10.5 | -0.399 | -- | 0.822 | -- | -- | -0.113 | -- | 43.89 | 202 | -- | -- |
| 29.98 | 0.255 | 10.5 | -- | 0.866 | 0.118 | -- | -- | -0.16 | 4.69 | 30 | 9 | -- | -- |
| 64.74 | 0.376 | 10.5 | -0.564 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 30.2 | 0.257 | 10.5 | -- | 0.897 | -- | -- | -- | -0.179 | 4.59 | -- | -- | -- | -- |
| 58.66 | 0.357 | 10.5 | -- | -- | 0.885 | -- | -- | -0.0415 | -- | 31.99 | 204 | -- | -- |
| 73.12 | 0.399 | 10.5 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 20 | 7 |
| 3 | 16.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 4 | 16.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 7 |
| 69 | 16.82 | temperature | 25 | 90 | < th | dose dependent | sin | 12 | NA |
| 92 | 16.88 | wind | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 94 | 16.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 4 |
| 101 | 16.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 20 | 15 |
| 103 | 16.89 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 13 |
| 120 | 16.93 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 12 |
| 123 | 16.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 132 | 16.97 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 137 | 16.98 | wind | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 142 | 16.99 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 20 | 14 |
| 190 | 17.06 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 215 | 17.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 223 | 17.11 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 5 |
| 232 | 17.13 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 6 |
| 239 | 17.14 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 247 | 17.15 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 262 | 17.16 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 363 | 17.26 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 7 | 19 |
| 374 | 17.27 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 2 |
| 384 | 17.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 385 | 17.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 387 | 17.28 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 402 | 17.29 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 16 | 10 |
| 416 | 17.31 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 23 | 3 |
| 438 | 17.32 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 20 | 6 |
| 443 | 17.32 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 5 |
| 447 | 17.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 457 | 17.32 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 486 | 17.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 15 |
| 494 | 17.35 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 23 |
| 495 | 17.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 512 | 17.36 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 524 | 17.37 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 21 | 3 |
| 526 | 17.37 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 12 |
| 533 | 17.37 | temperature | 10 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 563 | 17.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 12 |
| 572 | 17.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 594 | 17.40 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 607 | 17.41 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 3 |
| 623 | 17.42 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 21 |
| 643 | 17.43 | radiation | 40 | 30 | < th | dose independent | rect. | 8 | 18 |
| 679 | 17.44 | humidity | 60 | 90 | > th | dose independent | rect. | 17 | 14 |
| 696 | 17.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 732 | 17.46 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 20 | 6 |
| 740 | 17.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 801 | 17.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 820 | 17.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 827 | 17.50 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 10 |
| 828 | 17.50 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 12 |
| 862 | 17.51 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 6 |
| 880 | 17.51 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 921 | 17.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 928 | 17.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 930 | 17.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 962 | 17.54 | atmosphere | 995 | 90 | > th | dose independent | rect. | 7 | 10 |